DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and cdh-1

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_497641.2 Gene:cdh-1 / 187783 WormBaseID:WBGene00019994 Length:2779 Species:Caenorhabditis elegans


Alignment Length:929 Identity:225/929 - (24%)
Similarity:362/929 - (38%) Gaps:170/929 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IADKNDSPPYFDRFLYETEIDENADLQSTVLTV--NAKDHNESTNIRYQITGGNIGNAFAVQNTT 88
            :.|....||.|::.|::.||.|:..:.:.::.|  |......|..|||.:.  |......|...:
 Worm   530 LLDTESKPPQFEKALWQVEIPEDTPIGTCLVKVVANNSQCGNSKRIRYSLQ--NQDEHLTVDTMS 592

  Fly    89 GVIYVASPLDYETRPRYELRLEATR-NRKNNYTTVVINVRDVNDNPPVFDRQTYRTQITEEDDRN 152
            |.:.:....|:|.:..|:..:.||. |.:.:.:.:.|.::|||||.|:|....|...:.|.....
 Worm   593 GTVCIQKTFDFEKQKSYQTTVIATNANSETSTSLISIRLKDVNDNWPIFYPNEYHLTVREGPKPE 657

  Fly   153 LPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQ 217
            .|  :|.|:|:|.|......:.|.:..:        :|.|.||..||::|..|||.|    ||  
 Worm   658 EP--LLVVSASDMDSGTFGEVSYHILSE--------SSSFSINPVTGEVFAQKPLAR----GR-- 706

  Fly   218 WRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTEN---GTAGSSVMTMSAVDY 279
            :...|.|:|.||:.....|:|.:.:.|.:...|||.:..|....||:   |.|..||..||.|.|
 Worm   707 FHLVVSAKDGGGQSSENSANIHITVIDKDTKTPQFSRSKYEIRTTEDILPGIAIGSVGAMSKVKY 771

  Fly   280 DDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGL 344
            .          |||.:::        ..|.|:.:||.| .....||.:......:.:.|....|.
 Worm   772 S----------IYSGDQD--------HNFSIDEDTGKI-YVTRYLDADVHDTVLLNIQATLPSGE 817

  Fly   345 KGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDED--ETNTFQYKVV-- 405
            .......|.::|.||.||||:..  :.|:.......:.| |...|...|:|  :....:|.::  
 Worm   818 SNQTQVVIFIEDHNDNPPQFSSS--LVEISIREDLKLHE-PFYVVQASDKDKKKNGEVRYSIISS 879

  Fly   406 -PNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYS 469
             |.|....|:|        ||.|.....||||   .:..::.|::..|.|.. |..|:      .
 Worm   880 HPGSSIEIDQF--------TGQLSTGSLLDYE---ATRNYKLRVKATDLGIP-PRSSN------M 926

  Fly   470 WVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQF 534
            .:.:.:.|:|||.|:|::....:.:.|::...||:.:..|.|.|...:.::.|:|   ||....|
 Worm   927 TLFIHVLDVNDNAPEFEKSWYTMEVLENSPPKTIVGKVVARDKDSLENGQIVYRI---TNGSEYF 988

  Fly   535 AISDR-GAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTL 598
            .|.:: |.|..:|.:|||......|.|:|.|.|.|.|::||:..:.|.|||||.|:........:
 Worm   989 GIDEKLGNVYTKRSIDREVISHVDISIVAEDKGVPPRSSTASARISVLDVNDNPPSCLSITPIVV 1053

  Fly   599 PE-NVSGKKILEVAAKDPDDRLRG----------------NGGPFTFRLDPLASDEIKAGFKVEY 646
            |. :.....|..:.|.|||..|.|                :.|....|....||||......|..
 Worm  1054 PAGSPLSTAIGTIVAMDPDKGLNGSVLYRAQLQSSLFVVKSNGDVYLRRQLNASDERHQRLSVIV 1118

  Fly   647 DRRG------------DNENGVAIISSLRPFDREAQKSYAIP----------------------- 676
            ..:|            ....|.|.|....||    ||...||                       
 Worm  1119 SDQGVPRKSVVCHVPVRISKGSADIQIQEPF----QKYIEIPKSCPTGCRLTTLNATGVSSWLIQ 1179

  Fly   677 -IEIKDNGA-----------PAMTGTSTLTVTIGDVNDNKM----------QPGSKSVLVYNYQG 719
             .||.::.|           |......:|.:.:.|.||.:.          :..:|...:.....
 Worm  1180 SSEISNHFAIREGVLFMISHPIHRPPYSLVIVLSDKNDRQKSIQLRVLASGEAANKEETIRISDS 1244

  Fly   720 QSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGILTMRAGTRRG---RYQLRFKVY 781
            .|..|.|||:.....|.    ...|.:..:|....:||...|:|.:..|.|||   .:...|:.:
 Worm  1245 NSIGTKIGRLGEKSADG----SFFYRFSSEESCPLELDQTGGLLYLADGLRRGDTHNFSCFFEKF 1305

  Fly   782 DREHGQ-EDIPANLSVTVRDITAEAVQQAGSMRLSHITDE---DFVRTWNPVKNQVEPSKLE-RF 841
            :...|. |::..:|.:: |..:.:.....|.:|::...|.   ..:.|.|...:....|.:. ||
 Worm  1306 NTTDGSAEEMRVDLEIS-RTKSDKPRFDTGHLRVNIREDTPTGSIITTVNATVSDDSASPISYRF 1369

  Fly   842 RNKLAELLYTDRDNVDVFS 860
            .      |..|..::|.|:
 Worm  1370 P------LLIDNFSIDQFT 1382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 22/93 (24%)
Cadherin_repeat 140..248 CDD:206637 30/107 (28%)
Cadherin_repeat 256..359 CDD:206637 25/105 (24%)
Cadherin_repeat 379..481 CDD:206637 24/106 (23%)
Cadherin_repeat 489..586 CDD:206637 31/97 (32%)
Cadherin_repeat 594..703 CDD:206637 32/172 (19%)
Cadherin_repeat 724..801 CDD:206637 20/80 (25%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh-1NP_497641.2 Cadherin_repeat 29..118 CDD:206637
Cadherin_repeat 129..229 CDD:206637
Cadherin_repeat 238..328 CDD:206637
Cadherin_repeat 459..532 CDD:206637 0/1 (0%)
Cadherin_repeat 546..637 CDD:206637 22/92 (24%)
Cadherin_repeat 645..733 CDD:206637 29/103 (28%)
Cadherin_repeat 746..833 CDD:206637 26/105 (25%)
Cadherin_repeat 843..938 CDD:206637 25/113 (22%)
Cadherin_repeat 947..1041 CDD:206637 31/96 (32%)
Cadherin_repeat 1051..1136 CDD:206637 16/84 (19%)
Cadherin_repeat 1337..1426 CDD:206637 11/52 (21%)
Cadherin_repeat 1445..>1515 CDD:206637
Cadherin_repeat 1638..1723 CDD:206637
Cadherin_repeat 1734..1817 CDD:206637
Cadherin_repeat 1836..1923 CDD:206637
Cadherin_repeat 1934..2025 CDD:206637
Cadherin_repeat 2034..2120 CDD:206637
Cadherin_repeat 2135..2226 CDD:206637
Cadherin_repeat 2235..2330 CDD:206637
Cadherin_repeat 2345..2437 CDD:206637
Cadherin_repeat 2446..2534 CDD:206637
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3B9B2
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100175
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.800

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