DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Y52B11A.11

DIOPT Version :10

Sequence 1:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001300392.1 Gene:Y52B11A.11 / 13182034 WormBaseID:WBGene00014914 Length:341 Species:Caenorhabditis elegans


Alignment Length:384 Identity:94/384 - (24%)
Similarity:144/384 - (37%) Gaps:114/384 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   521 AYKIVRSTNRKRQFAISD---RGAVSIQRPLDRETQDRHHIQILAIDDG--SPARTATATLTVIV 580
            |::::.:.:|    .||:   ..|:.....||....||.    |.:.:|  :.|......|.:.:
 Worm    10 AFRLILTASR----GISESRINKAIVFDYLLDNRIPDRW----LPLVEGILNLASDLAYHLDLPI 66

  Fly   581 KDVNDNAPTFAQDYKPTLPENVSGKKILEVAAKDPD---DRLRGNGGPFTFRLDPLASDEIKAGF 642
            ...:||||.|     |..|:|..|:.    ..:..|   ||....||.             :.| 
 Worm    67 ARFDDNAPDF-----PRGPDNNGGRG----GGRGGDRGGDRGGDRGGD-------------RGG- 108

  Fly   643 KVEYDRRGDNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQP 707
                ||.||           |..||..::...   ..:|.|..  .|.....|   .||.|    
 Worm   109 ----DRGGD-----------RGGDRGGRRGRG---GYRDGGGG--RGEEMFNV---HVNGN---- 146

  Fly   708 GSKSVLVYNYQG-------QSQDTPI-------------------GRVYVNDPDDWDVPDKKYYW 746
                 :|.::|.       |::|.||                   |||||:|.||||:.||.:.|
 Worm   147 -----VVGDWQNHLVGIAVQTRDVPILNVRFNARDSTYRDTAQLNGRVYVDDADDWDLGDKTFSW 206

  Fly   747 EVQEHQRFKLDTDTGILTMRAGTRRGRYQLRFKVYDREHGQEDIPANLSVTVRDITAEAVQQAGS 811
            : .....|:| :|.|.:||......|.|.:...|:|... .||....::|.|..:...|....||
 Worm   207 K-DSRPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNAR-DEDAVGYVTVIVNAVPQIAFDNQGS 268

  Fly   812 MRLSHITDE-------DFVRTWNPVKNQVEPSKLERFRNKLAELLYTDRDNVDVFSVQL 863
            ::|. |.:|       ||:|.     :....|.::.|:.::...:..| ..|||||||:
 Worm   269 VQLL-IAEETPLQLPDDFIRA-----DSNGQSLMDTFKQEMTAYMGGD-VTVDVFSVQV 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637
Cadherin_repeat 256..359 CDD:206637
CA 388..483 CDD:214520
Cadherin_repeat 489..586 CDD:206637 13/69 (19%)
Cadherin_repeat 594..703 CDD:206637 23/111 (21%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
Y52B11A.11NP_001300392.1 None
Blue background indicates that the domain is not in the aligned region.

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