DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Cdh13

DIOPT Version :10

Sequence 1:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_062681.2 Gene:Cdh13 / 12554 MGIID:99551 Length:714 Species:Mus musculus


Alignment Length:758 Identity:212/758 - (27%)
Similarity:327/758 - (43%) Gaps:143/758 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLTNSTYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADL--QSTVLTVNAKDHNESTNIRYQ 72
            ||.:...|||.      ||..:..|.|.|.:  ..|.:.|:.  ...||.:...|...:..:.|:
Mouse    11 VLLSQVLLVTS------ADDLECTPGFQRKV--LHIHQPAEFIEDQPVLNLTFNDCKGNEKLHYE 67

  Fly    73 ITGGNI-----GNAFAVQNTTGV---IYVASPLDYETRPRYELRLEATRNRKNNYTTVVINVRDV 129
            ::..:.     |...|::|.|.|   ::|     :...|..|...|          .|::..:|:
Mouse    68 VSSPHFKVNSDGTLVALRNITAVGRTLFV-----HARTPHAEDMAE----------LVIVGGKDI 117

  Fly   130 NDN-PPVFDRQTYRTQ---------------ITEEDDRNLPKRILQVTATDGDVDRPINIVYFLT 178
            ..: ..:|  :..||.               |.|...:..|:.:.:|.    |.|||....:.||
Mouse   118 QGSLQDIF--KFARTSPVPRQKRSIVVSPILIPENQRQPFPRDVGKVV----DSDRPEGSKFRLT 176

  Fly   179 GQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLK 243
            |:|:|.|  ....|.||..||.:.|.:.|||:.   ...::..|...|..|:.|.|...::|.:.
Mouse   177 GKGVDQD--PKGTFRINENTGSVSVTRTLDRET---IATYQLYVETTDASGKTLEGPVPLEVIVI 236

  Fly   244 DINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIF 308
            |.|||.|.|.:|.|.|:|.|....|::||.|:|.|.||| .:.||.|.|:|.:.. .::....:|
Mouse   237 DQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDP-ATDNALLRYNIRQQT-PDKPSPNMF 299

  Fly   309 EIEPETGLIKTAV--CCLDRE--RTPDYSIQVVAMDGG----GLKGTGTASIRVKDLNDMPPQFT 365
            .|:||.|.|.|.|  ..||||  ..|.|.:.:.|.|..    ||.||.||:|.:.|.||..|:||
Mouse   300 YIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDDKNDHSPKFT 364

  Fly   366 KDEWVTEVDE-TNGTYIPETPILTVTVQDEDETNT----FQYKVVPNSGFGADKFAMVRNGD-GT 424
            |.|:...|:| ..|.      |:.:||:|:|:..|    ..|.::  :|.....|.:..|.. ..
Mouse   365 KKEFQATVEEGAVGV------IVNLTVEDKDDPTTGAWRAAYTII--NGNPGQSFEIHTNPQTNE 421

  Fly   425 GSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD--------GPGGSDKYHVAYSWVVVKLRDINDN 481
            |.|.:::|||||    .|.|. .:.:..:.:|        ||..:...|:.       :.|:|:.
Mouse   422 GMLSVVKPLDYE----ISAFH-TLLIKVENEDPLVPDVSYGPSSTATVHIT-------VLDVNEG 474

  Fly   482 VPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR------STNRKRQFAISDRG 540
             |.|..:.:.|:..|:..||::|....|||.|...|..:.|.|.:      |.|       ...|
Mouse   475 -PVFYPDPMMVTKQENISVGSVLLTVNATDPDSLQHQTIRYSIYKDPAGWLSIN-------PING 531

  Fly   541 AVSIQRPLDRETQDRHH----IQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPEN 601
            .|.....||||:...|:    ...||||.|:|..|.|.||.:.::|:|||||..    .||:.|.
Mouse   532 TVDTTAVLDRESPFVHNSVYTALFLAIDSGNPPATGTGTLLITLEDINDNAPVI----YPTVAEV 592

  Fly   602 VSGKKILEV---AAKDPDDRLRGNGGPFTFRL-DPLASDEIKAGFKVEYDRRGDNENGVAIISSL 662
            ....:.|.|   .|.|.|  |..|..||.|.: .....|::....|:        .|..|::|.|
Mouse   593 CDDARNLSVVILGASDKD--LHPNTDPFKFEIHKQTVPDKVWKISKI--------NNTHALVSLL 647

  Fly   663 RPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKM 705
            :..::   .:|.:||.:.|:|.|.||..:.|.|.:....::|:
Mouse   648 QNLNK---ANYNLPIMVTDSGKPPMTNITDLRVQVCSCKNSKV 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637 17/100 (17%)
Cadherin_repeat 140..248 CDD:206637 33/122 (27%)
Cadherin_repeat 256..359 CDD:206637 42/110 (38%)
CA 388..483 CDD:214520 24/107 (22%)
Cadherin_repeat 489..586 CDD:206637 33/106 (31%)
Cadherin_repeat 594..703 CDD:206637 29/112 (26%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
Cdh13NP_062681.2 Cadherin_pro 26..111 CDD:462590 18/101 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 156..183 11/30 (37%)
CA 161..243 CDD:214520 30/90 (33%)
Cadherin_repeat 249..359 CDD:206637 43/111 (39%)
Cadherin 368..469 CDD:394985 26/120 (22%)
Cadherin_repeat 488..581 CDD:206637 32/99 (32%)
Cadherin 589..680 CDD:394985 27/103 (26%)
Blue background indicates that the domain is not in the aligned region.

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