DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and cdh16

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_021327694.1 Gene:cdh16 / 101886380 ZFINID:ZDB-GENE-140106-140 Length:724 Species:Danio rerio


Alignment Length:747 Identity:176/747 - (23%)
Similarity:310/747 - (41%) Gaps:162/747 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VRIGIADKNDSPPYFDRFLYETEIDENADLQSTV----------LTVNAKDHNE----STNIRY- 71
            |.:.:.||||:.|.|        ::|:  ::.:|          :.|.|.|.::    ..::|: 
Zfish     8 VEVCVIDKNDNVPVF--------LEES--MRGSVQLGLLKGIPFMQVEALDRDDRNTAHADLRFS 62

  Fly    72 ---QITGGNIGNAFAVQNTTGVIYV----ASPLDYETRPRYEL--RLEATRNRKNNYTTVVINVR 127
               ||......:.|::.:.||.:.:    ||.||.|...||:|  .::....:.|.:.:....:.
Zfish    63 LLDQIPRIPASHMFSIDSITGEVSLTEDGASTLDPEMCGRYKLSVMVQDMAGKANAFFSTGTVLV 127

  Fly   128 DVNDN-----PPVFDRQTYRTQITEEDDRNLPKRILQVTATDGDVDRPIN--------IVYFLTG 179
            :|..|     .||      |.|      .|||          |....||:        :.|.|.|
Zfish   128 EVTGNAWASPDPV------RLQ------ENLP----------GPYPIPISQVKWSGSPVEYSLEG 170

  Fly   180 QGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKD 244
            :  .|:    ..|.||| .|.|::..||||:.   :.|:...:..:...|..:....:::|.:.|
Zfish   171 E--FPE----MLFTINR-EGIIYLNAPLDRET---QDQFHIDIVVERPDGREIAKPVELRVMVGD 225

  Fly   245 INDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFE 309
            .|||.|.|||..|...|.|..|.|:.::|:.|.|.||| ::.|.::.|.:...:  .||...:|.
Zfish   226 ANDNRPTFPQMQYHTVVKELATKGTEILTVQAADNDDP-KTDNVRIFYRLVGQM--PETPRNLFR 287

  Fly   310 IEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTASIRVKDLNDMPPQFTKDEW----V 370
            ::.::|:|......:: ...|.|::.:.|.|..||..:.|..::|.|.|:.||.|:..|:    :
Zfish   288 VDRDSGVITVQADSME-GTAPQYTLTITAEDAKGLNSSCTVIVKVLDENNNPPIFSHLEYGPFHL 351

  Fly   371 TEVDETNGTYIPETPILTVTVQDEDE--TNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKII--Q 431
            .| |.:.|     |.:..|:..|.||  .:::|......||...:.|.:: |...|....:|  :
Zfish   352 AE-DSSVG-----TTVTVVSAWDADEWGGDSWQVDYRLESGNEEEVFTLL-NDRQTNEAALILDK 409

  Fly   432 PLDYEDPLQSSGFRFRIQVND-----KGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIE 491
            .||:|   :.:.:...:...:     :|..||..:       :.|.:.:.|||:. |...:.|.|
Zfish   410 VLDFE---RENEYILVLSAQNPVALVRGRYGPAST-------ATVTIFIDDINEG-PVLSQSHYE 463

  Fly   492 VSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAISD-RGAVSIQRPLDRETQDR 555
            |::.|..:.|.::...:..|.|.   ..:.|.:...|  ||.|:|.. .|.:...:.||||....
Zfish   464 VTVREGEEPGRVIATIRGYDPDS---HPIRYSLRGDT--KRYFSIGKYSGELKTVQALDREENHT 523

  Fly   556 HHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYK------PTLPENVSGKKILEVAAKD 614
            :.::::|.|..:.:.:|:..:||.:.|||||:|....||.      |...:     :.|.:|::|
Zfish   524 YTMEVVAEDGRNSSLSASTLVTVHILDVNDNSPVLVGDYSWKYLCTPRWED-----QALVLASRD 583

  Fly   615 PDDRLRGNGGPF----------TFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREA 669
            .|....|....|          |::|.|:..........|.|               |.|     
Zfish   584 SDGPQHGGRLNFSLRSDATVRRTWKLTPINDTHTNLSLNVPY---------------LPP----- 628

  Fly   670 QKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVN 701
             :.|.:|..|.|:.:|..:....|.||:...|
Zfish   629 -EVYIVPFTISDSSSPPRSTFINLPVTVCPCN 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 21/114 (18%)
Cadherin_repeat 140..248 CDD:206637 27/115 (23%)
Cadherin_repeat 256..359 CDD:206637 27/102 (26%)
Cadherin_repeat 379..481 CDD:206637 22/110 (20%)
Cadherin_repeat 489..586 CDD:206637 26/97 (27%)
Cadherin_repeat 594..703 CDD:206637 24/124 (19%)
Cadherin_repeat 724..801 CDD:206637
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh16XP_021327694.1 Cadherin_repeat 26..130 CDD:206637 19/105 (18%)
Cadherin_repeat 140..229 CDD:206637 28/120 (23%)
Cadherin_repeat 237..337 CDD:206637 28/103 (27%)
Cadherin_repeat 349..453 CDD:206637 24/120 (20%)
Cadherin_repeat 461..554 CDD:206637 26/97 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.100

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