DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh27

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_017213763.2 Gene:cdh27 / 101882839 ZFINID:ZDB-GENE-141215-13 Length:813 Species:Danio rerio


Alignment Length:605 Identity:153/605 - (25%)
Similarity:248/605 - (40%) Gaps:135/605 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 ITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDR 209
            |.||.....|..:.|:     .:||...:.:.|.|:|:| :|| .....|:..||.|.|.:.:|.
Zfish    33 IVEEHPGPFPYELGQI-----KLDRKYLVEFGLKGKGVD-ENP-KGVLSIDSKTGVIMVHRKVDY 90

  Fly   210 DQPNGRPQWRFTVF-----AQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGS 269
            :|        |::.     |:::....:.....::||:.|||||.|.|.:.:|...|.|....|.
Zfish    91 EQ--------FSILMLTFQARNKSNSAIDTQLGMEVNILDINDNPPVFQRKLYDVTVNEAAKQGD 147

  Fly   270 SVMTMSAVDYD---DPNESTNAKLIYSI--EKNV--IEEETGAPIFEIEPETGLIKTAVCCLDRE 327
            .::.:.|:|.|   .||.:.:.|:|..:  .|||  ..::.||..|:            .|.|.|
Zfish   148 FIVGVLAIDKDAAGTPNSTIDYKIISVVPTTKNVEFYIQDNGAISFK------------GCFDYE 200

  Fly   328 RTPDYSIQVVAMDGG---GLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDE-TNGTYIPETPILT 388
            ....|:|.|.|.|.|   .|..|.|..|.::|.|:..|..|.......|.| ||||    :| |.
Zfish   201 VASKYTIMVEAKDRGEVVKLSSTATVVINLQDGNNHIPVITGQTGSGNVVEGTNGT----SP-LK 260

  Fly   389 VTVQDEDETNTFQYKVVPNSGFGADK---FAMVRNGDGT-GSLKIIQPLDYEDPLQSSGFRFRIQ 449
            :...|.|...|..::|  ......||   |::..:.|.. |.:.:::|||:|   :.:..:..|.
Zfish   261 IHTTDADTRPTAAWRV--RYSIEGDKGGHFSIRTDPDNNDGIITVVKPLDFE---KQTEHKLSIS 320

  Fly   450 VNDK--------GDDGPGG-----SDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVG 501
            |.::        .:..|.|     |:....:...:.:.:.|.|| .|.|.....:|.:.|:..:|
Zfish   321 VENEEPYFSCVVKERSPSGLWTVISNPSKPSSKNITITVEDAND-PPYFTDPQRKVILEENGPIG 384

  Fly   502 TILEQFKATDADQGGHSKVAYKI---------VRSTNRKRQFAISDRGAVSIQRPLDRE----TQ 553
            ..:::.||.|.|.|...|:.|.|         |..|.          |.:.::..:|||    |.
Zfish   385 AFVDRVKAIDPDTGRPHKLEYSIEHDPAGWFRVDKTT----------GEIFVKETVDRESSYVTN 439

  Fly   554 DRHHIQILAID-DGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVSGKKILEVAAKDPDD 617
            ..:.|.:|..: |..|..|:|||:.:.|:|.|||.|...::.......:.:..  .||:|:|.| 
Zfish   440 GTYTIFVLVTEKDDHPPMTSTATIQLYVEDKNDNVPLLKENRVSVCQSDQASS--AEVSAQDLD- 501

  Fly   618 RLRGN--GGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQKSYAIPIE-I 679
               |:  .|||:|.:                  .||::.|.:       ||    .||...:. :
Zfish   502 ---GDPYSGPFSFEI------------------IGDHKEGWS-------FD----PSYGYTVRLV 534

  Fly   680 KDNGAPAMTGTSTLTVTIGD 699
            ||....|  ...||:|.|.|
Zfish   535 KDKRVHA--SLYTLSVKISD 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 27/107 (25%)
Cadherin_repeat 256..359 CDD:206637 31/112 (28%)
Cadherin_repeat 379..481 CDD:206637 23/118 (19%)
Cadherin_repeat 489..586 CDD:206637 29/110 (26%)
Cadherin_repeat 594..703 CDD:206637 25/109 (23%)
Cadherin_repeat 724..801 CDD:206637
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh27XP_017213763.2 CA <65..128 CDD:214520 19/72 (26%)
Cadherin_repeat 135..236 CDD:206637 32/112 (29%)
Cadherin_repeat 246..364 CDD:206637 27/127 (21%)
Cadherin_repeat 375..473 CDD:206637 29/107 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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