DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh20

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_012820890.2 Gene:cdh20 / 100498629 XenbaseID:XB-GENE-1011620 Length:796 Species:Xenopus tropicalis


Alignment Length:770 Identity:191/770 - (24%)
Similarity:347/770 - (45%) Gaps:154/770 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 NIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEG-GEGLVGY 235
            :|.|.|:|.|      |.:.|.|:..||||..::.|||::   |.|:.....|.|.. .:.:...
 Frog    92 SIKYILSGDG------AGTMFTIDDGTGDIHAIQRLDREE---RSQYTLRAQALDRSTNKPMEPE 147

  Fly   236 ADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIE 300
            ::..:.::|||||.|:|..|.|..:|.|....|:|::.:||.|.|||...::|:::|||.:    
 Frog   148 SEFIIKIQDINDNEP
KFLDGPYTASVAEMSPVGTSIIQVSATDADDPTYGSSARVVYSILQ---- 208

  Fly   301 EETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDG----GGLKGTGTASIRVKDLNDMP 361
               |.|.|.::.:||:|:||:..:|||....|.:.:.|.|.    |||.||.:.:|.:.|:||.|
 Frog   209 ---GQPYFSVDSKTGVIRTALTNMDRESREYYEVIIQAKDMGGQLGGLAGTTSVNITLSDVNDNP 270

  Fly   362 PQFTKDEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRN-GDGTG 425
            |:|.:..:...|.|::........:|.:.: ||......:|.::...||  :.|.:|.: .:..|
 Frog   271 PRFPQKHYQMNVLESSPVNSTVGRVLAMDL-DEGVNAEMKYSIIDGDGF--EFFDIVTDPSNQVG 332

  Fly   426 SLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAY---------SWVVVKLRDINDN 481
            .:.:.:|||:|:   ...:..:|:         |.:....:.:         :.|.:.:.|: |.
 Frog   333 VITVKKPLDFEN---KKSYTLKIE---------GSNPHLEIRFLNLGPFRDTTSVHISVEDV-DE 384

  Fly   482 VPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAIS-DRGAVSIQ 545
            .|.|:.....|.:.|:..:||.::...|.|.|...:| |.|.|.|:::..|.|.:. ..||:...
 Frog   385 PPVFESNIYFVEVSENVDIGTTIQIVSAKDPDATNNS-VRYSIDRNSDPGRYFYVDVTTGALMTA 448

  Fly   546 RPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVSGKKILE- 609
            ||||||....|:|.|||::..:|.:.....:|:.:.|||||||||.:.|:..:.||....:::: 
 Frog   449 RPLDREEVSWHNITILAMEMNNPKQIGGVPVTIKILDVNDNAPTFTRFYETLMCENAKADQLIQT 513

  Fly   610 VAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRP-FDREAQKSY 673
            |:|.|.||...|.  ..::.|.|.|::  ...|.:.     ||::..|:|.:.|. |.:..|.::
 Frog   514 VSAVDQDDPQEGQ--HISYSLAPEAAN--NPNFTLR-----DNQDNTALILTRRAGFKQSEQSTF 569

  Fly   674 AIPIEIKDNGAPAMTGTSTLTVTI------GDVNDNKMQPGS----------------------- 709
            .:|:.|.|||.|.::.|.|||:.:      ||:.....:|.:                       
 Frog   570 YLPLLISDNGHPRLSSTGTLTIQVCSCDEDGDIMSCNAEPYTLPISLSRGALIAILACIFVLLVL 634

  Fly   710 ------------------------KSVLVYNYQGQSQDTPIGRVYVNDPDDWDV-----PDKKYY 745
                                    ::::.|:.:|..::         |.:.:|:     |.:.:.
 Frog   635 VLLILSMRRHRKQPYTIDEEDNVHENIVRYDDEGGGEE---------DTEAFDIAALWNPREVHM 690

  Fly   746 WEVQEHQRFKLDTDTGILTM--RAGTRRGRYQLRFKVYDREHGQEDIPA----NLSVTVRDITAE 804
            .:.::..:.::::.:..:|.  |.......|.|. |:|:.:   .|:.|    :|...:.:....
 Frog   691 AKTRKDMKPEIESLSRYVTQSCRMDNNVHSYMLA-KLYEAD---TDVCAPPFDSLQTYMFEGEGS 751

  Fly   805 AVQQAGSMRLSHITDE----DFVRTWNPVKNQVEPSKLERFRNKLAELLYTDRDN 855
            ..|...|:: |..||.    |::..|.|           ||: ||||:..|...|
 Frog   752 VAQSLSSLQ-SLSTDSEQSYDYLTDWGP-----------RFK-KLAEMYGTKDKN 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 22/76 (29%)
Cadherin_repeat 256..359 CDD:206637 36/106 (34%)
Cadherin_repeat 379..481 CDD:206637 17/111 (15%)
Cadherin_repeat 489..586 CDD:206637 32/97 (33%)
Cadherin_repeat 594..703 CDD:206637 32/116 (28%)
Cadherin_repeat 724..801 CDD:206637 12/87 (14%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh20XP_012820890.2 CA 84..162 CDD:214520 24/78 (31%)
Cadherin_repeat 168..269 CDD:206637 37/107 (35%)
Cadherin_repeat 277..384 CDD:206637 19/122 (16%)
Cadherin_repeat 392..489 CDD:206637 32/97 (33%)
Cadherin 497..594 CDD:394985 30/105 (29%)
Cadherin_C 642..788 CDD:395833 28/171 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9756
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

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