DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and cdh10

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_002935630.3 Gene:cdh10 / 100496218 XenbaseID:XB-GENE-1012079 Length:787 Species:Xenopus tropicalis


Alignment Length:797 Identity:205/797 - (25%)
Similarity:334/797 - (41%) Gaps:196/797 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DVDR-PINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQ---D 226
            |:|: ..::.|.|:|.|      |.:.|.|:..||||...:.:||::     :..:|:.||   .
 Frog    80 DLDKGDESLKYILSGDG------AGTLFVIDEKTGDIHATRRIDREE-----KAFYTLRAQAVNR 133

  Fly   227 EGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLI 291
            ..|..:...::..:.:.|||||.|.|.:.:|..:|.|....|:.|:.::|.|.|||:...:||:|
 Frog   134 RTGRPVEPESEFVIKIHDINDNEP
TFLEEVYTASVPEMSDVGTYVVQVTAADADDPSYGNSAKVI 198

  Fly   292 YSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMD----GGGLKGTGTASI 352
            |||.:       |.|.|.:|||||:|:||:..::||....|.:.:.|.|    .|||.||.|.:|
 Frog   199 YSILQ-------GQPYFSVEPETGIIRTALPNMNRENREHYQVVIQAKDMGGQMGGLSGTTTVNI 256

  Fly   353 RVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAM 417
            .:.|:||.||:|:::.:...|        |||..:..||.....|:.       :.|..|:....
 Frog   257 TLSDVNDN
PPRFSQNSYHISV--------PETATVGSTVGRIKATDA-------DIGKNAEVEYR 306

  Fly   418 VRNGDGT-------------GSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAY- 468
            :.:||.|             |.:.:.:.||||   ....:..:::..:...|.       |..| 
 Frog   307 ILDGDETAVFNIFTEKSTQDGVITVRKRLDYE---SKRLYTLKVEAMNTHVDP-------HFYYL 361

  Fly   469 ------SWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRS 527
                  ..|.:.:.|: |..|.|.|......::||.::|||:....|.|.| ...|.|.:.:.|.
 Frog   362 GPFKDTCTVKISVEDV-DE
PPVFSRPSYMFKVHEDIELGTIIGTVMARDPD-AISSPVRFSLDRH 424

  Fly   528 TNRKRQFAI-SDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFA 591
            |:..|.|.| |..|::...:|||||....|::.::|.:..:|.:...||:.:::.|:|||||.||
 Frog   425 TDLDRIFHIYSGNGSIYTAKPLDREISQWHNLTVIATEINNPKQATRATVFILILDINDNAPEFA 489

  Fly   592 QDYKPTLPENV-SGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENG 655
            ..|...:.||. :|:.|..::|.|.|:  ...|..|.|   .|||  :...|.|:     |||:.
 Frog   490 MFYDTFVCENARAGQLIQTISAVDKDE--PPGGQKFFF---SLAS--VNPNFTVQ-----DNEDN 542

  Fly   656 VA-IISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTI---------------------- 697
            .| |::....|:|....:|.:|:.|.||..|..:.|.|||:.:                      
 Frog   543 TARILTRRNGFNRHEINTYLLPVVISDNDYPIQSSTGTLTIKVCTCDSQGNMQSCNAEALLLPAG 607

  Fly   698 ---------------------------------------GDVNDNKMQPGSKSVLVYNYQG---- 719
                                                   .|:.||        ::.||.:|    
 Frog   608 LSTGALIAILLCIIILLLIVVLFAALKRQRKKEPLVLSKEDIRDN--------IVSYNDEGGGEE 664

  Fly   720 QSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGILTMRAGTRRGRYQLRFKVYDR- 783
            .:|...||.  :.:|...|  |||        ||..:..::.:|..|.........:|..:..| 
 Frog   665 DTQAFDIGT--LRNPGSID--DKK--------QRRDIIPESLLLPRRTAAVPDNTDVRDFINQRL 717

  Fly   784 -EHGQE------DIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSKLERF 841
             ||..:      |..|..:....|..||::....|.......:.|:::.|.|           ||
 Frog   718 KEHDSDPTAPPYDSLATYAYEGNDSIAESLSSLDSSTTDGDQNYDYLKEWGP-----------RF 771

  Fly   842 RNKLAELL---YTDRDN 855
             |||||:.   .:|:|:
 Frog   772 -NKLAEMYGSGESDKDS 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 22/85 (26%)
Cadherin_repeat 256..359 CDD:206637 40/106 (38%)
Cadherin_repeat 379..481 CDD:206637 21/121 (17%)
Cadherin_repeat 489..586 CDD:206637 29/97 (30%)
Cadherin_repeat 594..703 CDD:206637 34/171 (20%)
Cadherin_repeat 724..801 CDD:206637 17/84 (20%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh10XP_002935630.3 CA 79..157 CDD:214520 24/87 (28%)
Cadherin_repeat 163..264 CDD:206637 41/107 (38%)
Cadherin_repeat 272..379 CDD:206637 22/132 (17%)
Cadherin_repeat 387..484 CDD:206637 29/97 (30%)
Cadherin 492..586 CDD:394985 33/105 (31%)
Cadherin_C 634..781 CDD:395833 38/178 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5175
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.