DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh6

DIOPT Version :10

Sequence 1:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_002935627.1 Gene:cdh6 / 100495587 XenbaseID:XB-GENE-484592 Length:792 Species:Xenopus tropicalis


Alignment Length:831 Identity:215/831 - (25%)
Similarity:343/831 - (41%) Gaps:198/831 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 PVFDRQTYRTQITEED---------DRNLPKR---------ILQVTATD--------GDVDR-PI 171
            |:.:|.:...|.|.|:         :|:..||         :.:.|.:|        .|.|: ..
 Frog    24 PLPERTSPSAQPTAEEQQLKEDNEMERSRSKRSWMWNQFFLLEEYTGSDYQYVGKLHSDQDKGDG 88

  Fly   172 NIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFA-QDEGGEGLVGY 235
            ::.|.|:|.|      |...|.||..||||...|.|||::   :|.:.....| :...|..:...
 Frog    89 SLKYILSGDG------AGDLFVINEKTGDIQATKRLDREE---KPVYILRAQAVKKTTGIPVEPE 144

  Fly   236 ADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIE 300
            ::..:.:.|||||.|.|.|.:|...|.|....|:.|:.::|.|.|||....:|:::|||.:    
 Frog   145 SEFVIKIHDINDNEPIFTQDLYTATVPEMSEVGTFVVQVTANDADDPTYGNSARVVYSILQ---- 205

  Fly   301 EETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMD----GGGLKGTGTASIRVKDLNDMP 361
               |.|.|.:|.|||:||||:..:|||....|.:.:.|.|    .|||.||...:|.:.|:||.|
 Frog   206 ---GQPYFSVESETGIIKTALPNMDRENREQYQVVIQAKDMGGQMGGLSGTTVVNITLSDVNDNP 267

  Fly   362 PQFTKDEWVTEVDET------------NGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADK 414
            |:|.:..:.....|:            |...:.|...:...:.:.||:|.|:  ::      .|:
 Frog   268 PRFYQSTYQFRALESSPVGSSIGKIKANDADVGENAEMEYHISEGDESNMFE--II------TDR 324

  Fly   415 FAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQ-VNDKGDD-----GPGGSDKYHVAYSWVVV 473
            ...      .|::.:.:.||:|   :...:..::: ||...:.     ||      ...|:.|.:
 Frog   325 ITQ------EGAITVKKALDFE---KKKLYTLKVEAVNSHINPRFLYLGP------FKDYATVRI 374

  Fly   474 KLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAI-S 537
            .:.|: |..|.|::......:.||.|:.||:....|.|.| ...|.|.|.:.|.|:..|.|.| |
 Frog   375 IVDDV-DEPPVFNKPAYVFEVKEDAKINTIIGSVMAQDPD-AARSPVKYSVDRHTDMDRIFNIDS 437

  Fly   538 DRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENV 602
            ..|::.|.:.|||||...|:|.::|.:..:|...:...:.|.|.|||||||..|..|:..:.||.
 Frog   438 GNGSIYILKSLDRETVLWHNITVIATEISNPKEISRVPVFVKVLDVNDNAPELAMLYEIFVCENA 502

  Fly   603 SGKKILE-VAAKDPDDRLRGNGGPFTFRL-DPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPF 665
            ..::::. |:|.|.||..  ||..|:|.| .|.||..       .:..:.:.:|..:|::....:
 Frog   503 KSEQVIHTVSATDKDDSF--NGLQFSFALATPQASSP-------NFTLKDNRDNTASILTRRNGY 558

  Fly   666 DREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNK--MQPGSKSVLVYNYQGQSQDTPIGR 728
            .|....:|.:|:.|.|.|.|..:.|.|||:.: ...|:|  ||..:...|::         |.| 
 Frog   559 SRHEMSTYILPVVISDYGYPIQSSTGTLTIRV-CACDHKGNMQSCTAEALIH---------PTG- 612

  Fly   729 VYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGIL--------------TMRAGTRRGRYQLRFK 779
                                         ..||.|              .:.|..||.|.:....
 Frog   613 -----------------------------LSTGALIAILLCIIILLVTVVLFAALRRQRKKEPLI 648

  Fly   780 VYDREHGQEDIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSKLERFRNK 844
            |     .:|||..|: |:..|       :.|....:...|...:|  ||  ..:|.|||.  |:.
 Frog   649 V-----SKEDIRDNI-VSYND-------EGGGEEDTQAFDIGTLR--NP--EAIEDSKLR--RDI 694

  Fly   845 LAELLY------TDRDNVDV---FSVQLKEGSPYPLTDVHFAARSATQQPY 886
            :.|.|:      ..|||.||   .:.:||:....|           |..||
 Frog   695 VPETLFFPRRTQAARDNTDVRDFINQRLKDNDMDP-----------TAPPY 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 32/135 (24%)
Cadherin_repeat 256..359 CDD:206637 38/106 (36%)
CA 388..483 CDD:214520 17/100 (17%)
Cadherin_repeat 489..586 CDD:206637 33/97 (34%)
Cadherin_repeat 594..703 CDD:206637 29/110 (26%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
cdh6XP_002935627.1 CA 81..159 CDD:214520 26/86 (30%)
Cadherin_repeat 166..266 CDD:206637 39/106 (37%)
Cadherin_repeat 274..381 CDD:206637 19/130 (15%)
Cadherin_repeat 390..486 CDD:206637 33/96 (34%)
Cadherin_repeat 494..591 CDD:206637 29/106 (27%)
CADH_Y-type_LIR 725..784 CDD:460041 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.

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