DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and cdh24

DIOPT Version :10

Sequence 1:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_031747121.1 Gene:cdh24 / 100489868 XenbaseID:XB-GENE-995690 Length:795 Species:Xenopus tropicalis


Alignment Length:820 Identity:216/820 - (26%)
Similarity:353/820 - (43%) Gaps:169/820 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 VNDNPPVF-------DRQTYRTQITEE----DDRNLPKRILQVTATDGDVDR-PINIVYFLTGQG 181
            ||..||.|       ..:|.|:.:..:    ::...|:.:| :.....|.|| .....|.|||:|
 Frog    33 VNGVPPAFYSWGHSPPLRTKRSWVWNQFFVIEEYAGPEPVL-IGRLHTDADRGEGRAKYLLTGEG 96

  Fly   182 IDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGG---EGLVGYADIQVNLK 243
                  |.|.|.|:..||:|.|.|.|||::     :..:.:.||....   ..|...:...:.::
 Frog    97 ------AGSVFVIDEKTGNIHVTKSLDREE-----KAEYVLLAQAVDKLTLRPLEPPSQFIIKVQ 150

  Fly   244 DINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIF 308
            |||||.|.|....|...|.|....|:||:.::|.|.|||....:|:|:|:|.:       |.|.|
 Frog   151 DINDNPPVFLHPPYRATVPEMSNVGTSVIQVTASDADDPTYGNSARLVYTILE-------GQPYF 208

  Fly   309 EIEPETGLIKTAVCCLDRERTPDYSIQVVAMD----GGGLKGTGTASIRVKDLNDMPPQFTKDEW 369
            .::|:||:|:||:..:|||...::.:.:.|.|    .|||.|:.|.::.:.|:||.||:|.::.:
 Frog   209 SVDPQTGVIRTAIPNMDRETQNEFLVVIQAKDMGGHVGGLSGSTTVTVTLSDVNDNPPKFPQNLY 273

  Fly   370 VTEVDETNGTYIPETPILTVTVQDED--ETNTFQYKVVPNSGFGADKFAMVRNGDG-TGSLKIIQ 431
            ...|.|   ...|.:.|..:...|.|  |.....|.::  .|...|.|::|.:..| .|.|::.:
 Frog   274 QFTVLE---NIAPGSVIGRLRAHDPDIGENAAMSYSIL--DGDAGDTFSVVSDSAGQDGILRVRK 333

  Fly   432 PLDYEDPLQSSGFRFRIQVNDKGDD------GPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHI 490
            .||:|   ....|.||::|.:...|      ||      ....:.|.|.:.|:|: .|.|.:|..
 Frog   334 SLDFE---SQRSFTFRVEVMNTVIDPQYIRRGP------FKDVTTVRVTVVDVNE-PPLFSQELY 388

  Fly   491 EVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAI-SDRGAVSIQRPLDRETQD 554
            .:|:.|:...|.|:...:|.|.|... |.::|.|...::.:..|:| .:.|.:.....||||.:.
 Frog   389 TMSVLENLPPGAIVGVVQAQDPDLHS-SSISYSIDPLSDPEVLFSIHPEDGTILTSVSLDREVRG 452

  Fly   555 RHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVS-GKKILEVAAKDPDDR 618
            .|.|.:.|.:..|.:..:.|.:.:.|.|||||.|..|:.|||.:.::.. |:.|..|..:|.|  
 Frog   453 EHSITVRASESDSSSHVSQAGVLIKVLDVNDNPPRLAEVYKPHVCDHAQPGQVIQTVRVRDAD-- 515

  Fly   619 LRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVA-IISSLRPFDREAQKSYAIPIEIKDN 682
              ...|.|:|:.....||   ..|.:.     ||::|.| ::.....|.|..:..:.:||||.||
 Frog   516 --SENGIFSFQSPAAISD---GNFTLR-----DNKDGSASLLVRHSSFWRSQKDIFLVPIEIMDN 570

  Fly   683 GAPAMTGTSTLTVTI------GDVNDNKMQPGSKS--------------------VLVYNYQGQS 721
            |.|.:|.|.||||::      |.|....:..||.:                    |.:::.|.:.
 Frog   571 GDPPLTSTDTLTVSLCHCETGGAVLTCHLTTGSAAGLSTPALLAILACALSLLALVSLFSLQRRH 635

  Fly   722 QDTPIGRVYVNDPDDWDVPDKKYYWE-----VQEHQRFKLDTDTGILTMRAGTRRG-----RYQL 776
            :.:|:...     :|.||.:....::     .|:.|.|.:   :.:...:.|...|     |..:
 Frog   636 KPSPLSLC-----EDEDVRENIITYDDEGGGEQDTQAFDM---SALQPPQTGLTGGFFHPPRMDV 692

  Fly   777 RFKVYDREHGQEDIPANLSV----------TVRDITA---EAVQ---------QAGSMRLSHIT- 818
            ..:|..|.......||::.|          ..||.||   :::|         .|||  ||.:| 
 Frog   693 LPRVPPRPTTHSPQPASVDVHRFLAHRLREAERDPTAPPYDSIQVYGFEGGDSSAGS--LSSLTS 755

  Fly   819 ------DEDF----VRTWNPVKNQVEPSKLERFRNKLAEL 848
                  :||.    :..|.|           .||. |||:
 Frog   756 SSGGAGEEDTGVEDIWEWGP-----------HFRT-LAEI 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637 2/2 (100%)
Cadherin_repeat 140..248 CDD:206637 30/115 (26%)
Cadherin_repeat 256..359 CDD:206637 35/106 (33%)
CA 388..483 CDD:214520 25/103 (24%)
Cadherin_repeat 489..586 CDD:206637 26/97 (27%)
Cadherin_repeat 594..703 CDD:206637 36/116 (31%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
cdh24XP_031747121.1 CA 79..157 CDD:214520 28/88 (32%)
Cadherin_repeat 163..264 CDD:206637 36/107 (34%)
Cadherin_repeat 273..357 CDD:206637 23/91 (25%)
Cadherin_repeat 388..484 CDD:206637 26/96 (27%)
CA_like 510..586 CDD:481204 28/87 (32%)
CADH_Y-type_LIR 723..785 CDD:460041 20/75 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.