DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh12

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_017950450.2 Gene:cdh12 / 100489783 XenbaseID:XB-GENE-982876 Length:826 Species:Xenopus tropicalis


Alignment Length:782 Identity:201/782 - (25%)
Similarity:337/782 - (43%) Gaps:162/782 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DVDRPI-NIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQD-EG 228
            |:|:.| ::.|.|.|.|      |.:.|.|:.|||||..:|.|||::   :|.:.....|.| ..
 Frog   114 DLDKGIGSVKYTLLGDG------AGTIFTIDDTTGDIHAIKSLDREE---KPFYTLRAQAVDIVT 169

  Fly   229 GEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYS 293
            |:.:...::..:.::|||||.|:|..|.|..:|.|....|:.|:.:.|.|.|||...::|:::||
 Frog   170 GKPVEPESEFIIKVQDINDNEP
KFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGSSARVVYS 234

  Fly   294 IEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDG----GGLKGTGTASIRV 354
            |.:       |.|.|.|:|:||:|:||:..:|||....|.:.:.|.|.    |||.||.|.:|.:
 Frog   235 ILQ-------GQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTTVNITL 292

  Fly   355 KDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDED--ETNTFQYKVVPNSGFGADKFAM 417
            .|:||.||:|.|..:..:|.|.:..   .:||..:...|.|  .....:|.:||  |.|.:.|. 
 Frog   293 TDVNDN
PPRFPKSIFHLKVPEASPV---GSPIGKIRAVDPDFGRNAEIEYSIVP--GDGGNLFD- 351

  Fly   418 VRNGDGT--GSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYSWVVVKLRDIND 480
            ::..|.|  |.:.:|:|||:|   ....:.|:::..:...|....|.......:.|.:.:.|: |
 Frog   352 IKTDDDTQEGIIFLIKPLDFE---TKKAYTFKVEATNVHLDHRFNSVGPFKDIATVKINVLDV-D 412

  Fly   481 NVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAI-SDRGAVSI 544
            ..|.|.:....:.:||||..|||:....|.|.|. |.|.:.|.|...|:....|.: ::.|.|:.
 Frog   413 E
PPVFSKPFYTMEVYEDTPTGTIIGAVTAQDLDI-GTSPIQYSIDAQTDADNNFVVDANEGTVAT 476

  Fly   545 QRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVSGKKILE 609
            ...||||:..:.:|.|:|....:|...:...:.:.|.|:|:..|.....|:.::.||....:|::
 Frog   477 NALLDRESTAQFNISIIASKVNNPQLASLVKIIINVLDINE
FPPEVYLPYETSVCENAKPGQIIQ 541

  Fly   610 -VAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLR-PFDREAQKS 672
             :.|.|.|  :...|..|:||..|.:|  ....|.:.     |.:|..|.|.:.: .:.|..::.
 Frog   542 IIGAVDRD--MSPAGQIFSFRQPPDSS--ANPNFTIH-----DYKNNTAGIQAQKHGYSRRQKEF 597

  Fly   673 YAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQGQSQDTPIGR--------- 728
            |.:|:.::|:..|..:.|||||:.:       .:..||.| |.:...::...|:|.         
 Frog   598 YLLPVVVEDSSYPIQSSTSTLTIRV-------C
RCDSKGV-VLSCNVEAIFLPVGLSTGALIAIL 654

  Fly   729 -----------VYV-------ND---PDDWDVPDKKYYWE-----VQEHQRFKLDTDTGILTMRA 767
                       :||       .|   ....|:.|...:::     .::.|.|    |.|.|.   
 Frog   655 LCIIILLVIVVLYVALRRQKKKDALMTSKEDIRDNVIHYDDEGGGEEDTQAF----DIGALR--- 712

  Fly   768 GTRRGRYQLRFKVYDREHGQEDI------------PANLSVTVRDITAEAVQQ------------ 808
                     ..||.:....:.||            |:..:..:||...|.:|:            
 Frog   713 ---------NPKVIEEHKVRRDIKPEHLCLPRQKPPSEFNTDIRDFINEKLQEHDADPNAPPYDS 768

  Fly   809 --------AGSM--RLSHITDE--------DFVRTWNPVKNQVEPSKLERFRNKLAELLYTDRDN 855
                    .||:  .||.|..:        ||:..|.|           .|:: |||:...:..|
 Frog   769 LATYAYEGTGSVAETLSSIESQNMEMEQEYDFLSDWGP-----------HFKS-LAEMFGKENYN 821

  Fly   856 VD 857
            :|
 Frog   822 LD 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 26/83 (31%)
Cadherin_repeat 256..359 CDD:206637 38/106 (36%)
Cadherin_repeat 379..481 CDD:206637 23/105 (22%)
Cadherin_repeat 489..586 CDD:206637 29/97 (30%)
Cadherin_repeat 594..703 CDD:206637 28/110 (25%)
Cadherin_repeat 724..801 CDD:206637 18/123 (15%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh12XP_017950450.2 CA 113..191 CDD:214520 28/85 (33%)
Cadherin_repeat 197..298 CDD:206637 39/107 (36%)
Cadherin_repeat 306..413 CDD:206637 25/116 (22%)
Cadherin_repeat 422..517 CDD:206637 28/95 (29%)
Cadherin_repeat 525..623 CDD:206637 28/113 (25%)
Cadherin_C 671..818 CDD:395833 30/174 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9756
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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