DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and Cdh11

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_445844.1 Gene:Cdh11 / 84407 RGDID:619742 Length:796 Species:Rattus norvegicus


Alignment Length:1593 Identity:284/1593 - (17%)
Similarity:397/1593 - (24%) Gaps:932/1593 - (58%)


- Green bases have known domain annotations that are detailed below.


  Fly  1542 VTATDGDKDRPQNIVYFLTGQGIDPDNPANSKFDINRTTGEIFVLKPLDRDQPNGRPQWRFTVFA 1606
            :.:.||      ||.|.|:|:|      |.:.|.|:..:|.|...|.|||::   |.|:.....|
  Rat    81 IDSGDG------NIKYILSGEG------AGTIFVIDDKSGNIHATKTLDREE---RAQYTLMAQA 130

  Fly  1607 QD-EGGEGLVGYADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVMTMTAVDYDDPNEGSNA 1670
            .| :....|...::..|.::|||||.|.|....|..||.|....|..|:.:||.|.|||..|::|
  Rat   131 VDRDTNRPLEPPSEFIVKVQDINDNPP
EFLHETYHANVPERSNVGTSVIQVTASDADDPTYGNSA 195

  Fly  1671 RLVYSIEKNVIEEETGSPIFEIEPDTGVIKTAVCCLDRERTPDYSIQVVAMD----GGGLKGTGT 1731
            :|||||.:       |.|.|.:|..||:|:||:..:|||...:|.:.:.|.|    .|||.||..
  Rat   196 KLVYSILE-------GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTK 253

  Fly  1732 ASIRVKDINDMPPQFTKDEWFTEVDETDGTALPEMPILTVTVHDED--ETNKFQYKVIDNSGYGA 1794
            .:|.:.|:||.||:|.:..:...|.|   .|:|...:..|...|.|  |.....|.::|  |.|.
  Rat   254 VTITLTDVNDN
PPKFPQSVYQMSVSE---AAVPGEEVGRVKAKDPDIGENGLVTYNIVD--GDGM 313

  Fly  1795 DKF---TMVRNNDGTGSLKIVQPLDYE-----------------DQLQSNG-FRFRIQVNDKGED 1838
            :.|   |.....||.  :|:.:|:|:|                 .:..||| |:..:.|....||
  Rat   314 ELFEITTDYETQDGV--VKLKKPVDFETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVKIAVED 376

  Fly  1839 NDNDKYHVAYSWVVVKLRDINDNKPHFERANVEVSVFEDTKVGTELEKFKATDPDQGGKSKVSYS 1903
            .|.....:|.|::            |        .|.|:...||.:.:..|.||| ...|.:.||
  Rat   377 ADE
PPMFLAPSYI------------H--------EVQENAAAGTVVGRVHAKDPD-AANSPIRYS 420

  Fly  1904 IDRSSDRQRQFAIN-QNGSVTIQRSLDREVVPRHQVKILAIDDGSPPKTATATLTVIVQDINDNA 1967
            |||.:|..|.|.|| ::|.:...:.||||......:.:.|.:..:..:.|...:.:.|.|:||||
  Rat   421 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNISVFAAEIHNRHQEAKVPVAIRVLDVNDNA 485

  Fly  1968 PKFLKDYRPVLPE--HVPP---RKVVEILATDDDDRSKSNGPPFQFRLDPSADDIIRASFKVEQD 2027
            |||...|...:.|  |..|   :.:|.:.|.|.||  .:|||.|.|.|.|  :.|...:|.|.. 
  Rat   486 PKFAAPYEGFICESDHPKPLSNQPIVTVSADDLDD--TANGPRFIFSLPP--EIIHNPNFTVRD- 545

  Fly  2028 QKGANGDGMAVISSLR-SFDREQQKEYMIPIVIKDHGSPAMTGTSTLTVIIGDVNDNKMQPGSKD 2091
                |.|..|.:.:.| .|.|::|..|::||||.|.|.|.|:.|:|||:.:              
  Rat   546 ----NRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKV-------------- 592

  Fly  2092 IFVYNYQGQSPDTPIGRVYVYDLDDWDLPDKKFYWEAMEHPRFKLDEDSGMVTMRAGTREGRYHL 2156
                                                                             
  Rat   593 ----------------------------------------------------------------- 592

  Fly  2157 RFKVYDRKHTQTDIPANVTVTVREIPHEAVVNSGSVRLSGISDEDFIRVWNYRTQSMSRSKMDRF 2221
                                                                             
  Rat   593 ----------------------------------------------------------------- 592

  Fly  2222 RDKLADLLNTERENVDIFSVQLKRKHPPLTDVRFSAHGSPYYKPVRLNGIVLMHREEIEKDVGIN 2286
                                                                             
  Rat   593 ----------------------------------------------------------------- 592

  Fly  2287 ITMVGIDECLYENQMCEGSCTNSLEISPLPYMVNANKTALVGVRVDTIADCTCGARNFTKPESCR 2351
                                                                             
  Rat   593 ----------------------------------------------------------------- 592

  Fly  2352 TTPCHNGGRCVDTRFGPHCSCPVGYTGPRCQQTTRSFRGNGWAWYPPLEMCDESHLSLEFITRKP 2416
                              |.|.|                                          
  Rat   593 ------------------CGCDV------------------------------------------ 597

  Fly  2417 DGLIIYNGPIVPPERDETLISDFIALELERGYPRLLIDFGSGTLELRVKTKKTLDDGEWHRIDLF 2481
                  ||.::                                                      
  Rat   598 ------NGALL------------------------------------------------------ 602

  Fly  2482 WDTESIRMVVDFCKSAEIAEMEDGTPPEFDDMSCQARGQIPPFNEYLNVNAPLQVGGLYREQFDQ 2546
                                                                             
  Rat   603 ----------------------------------------------------------------- 602

  Fly  2547 SLYFWHYMPTAKGFDGCIRNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCAQTETTARCWEHGNC 2611
                                                                             
  Rat   603 ----------------------------------------------------------------- 602

  Fly  2612 VGSLSEARCHCRPGWTGPACNIPTIPTTFKAQSYVKYALSFEPDRFSTQVQLRFRTREEYGELFR 2676
                              :||         |::|:                              
  Rat   603 ------------------SCN---------AEAYI------------------------------ 610

  Fly  2677 VSDQHNREYGILEIKDGHLHFRYNLNSLRTEEKDLWLNAIVVNDGQWHVVKVNRYGSAATLELDG 2741
                                                |||                          
  Rat   611 ------------------------------------LNA-------------------------- 613

  Fly  2742 GEGRRYNETFEFVGHQWLLVDKQEGVYAGGKAEYTGVRTFEVYADYQKSCLDDIRLEGKHLPLPP 2806
                                                                             
  Rat   614 ----------------------------------------------------------------- 613

  Fly  2807 AMNGTQWGQATMARNLEKGCPSNKPCSNVICPDPFECVDLWNVYECTCGEGRIMSPDSKGCMDRN 2871
                                                                             
  Rat   614 ----------------------------------------------------------------- 613

  Fly  2872 ECLDMPCMNGATCINLEPRLRYRCICPDGFWGENCELVQEGQTLKLSMGALAAILVCLLIILILV 2936
                                                        .||.|||.|||.|::|:|::|
  Rat   614 --------------------------------------------GLSTGALIAILACIVILLVIV 634

  Fly  2937 LVFVVYNR-RREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIP--IGGPMP----- 2993
            ::||...| ::|..|.:  .::|||||||.||||||||:|..||||..||.|  |.|.:|     
  Rat   635 VLFVTLRRQKKEPLIVF--EEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIK 697

  Fly  2994 PELAPMKMPIMYPVMTLMPGQEPN---VGMFIEEHKKRADGDPNAPPFDDLRNYAYEGGGSTAGS 3055
            ||...|..|.:.|.        ||   |..||....:.||.||.|||:|.::.|.|||.||.|||
  Rat   698 PEYQYMPRPGLRPA--------PNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGS 754

  Fly  3056 LSSLASGTDDEQQEYDYLGAWGPRFDKLANMYG 3088
            ||||.|.|.|...:||||..|||||.|||::||
  Rat   755 LSSLESATTDSDLDYDYLQNWGPRFKKLADLYG 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637 26/88 (30%)
Cadherin_repeat 1638..1741 CDD:206637 41/106 (39%)
Cadherin_repeat 1762..1861 CDD:206637 28/121 (23%)
Cadherin_repeat 1871..1966 CDD:206637 29/95 (31%)
Cadherin_repeat 1974..2083 CDD:206637 39/114 (34%)
EGF 2350..2380 CDD:278437 3/29 (10%)
LamG 2385..2570 CDD:238058 2/184 (1%)
EGF_2 <2605..2631 CDD:285248 0/25 (0%)
Laminin_G_2 2665..2800 CDD:280389 3/134 (2%)
EGF_CA 2869..2907 CDD:238011 0/37 (0%)
Cadherin_C 2952..3088 CDD:279398 72/145 (50%)
Cdh11NP_445844.1 CA 79..157 CDD:214520 28/90 (31%)
Cadherin_repeat 163..264 CDD:206637 42/107 (39%)
Cadherin_repeat 272..379 CDD:206637 27/113 (24%)
Cadherin_repeat 387..484 CDD:206637 31/117 (26%)
CA 514..598 CDD:214520 37/432 (9%)
Cadherin_C 649..787 CDD:279398 73/147 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5067
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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