DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN and si:dkey-88l16.3

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:XP_021335179.1 Gene:si:dkey-88l16.3 / 796880 ZFINID:ZDB-GENE-030131-6015 Length:2335 Species:Danio rerio


Alignment Length:749 Identity:132/749 - (17%)
Similarity:203/749 - (27%) Gaps:281/749 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  2294 ECLYENQMCEG--SCTNSLEISPLPYMVNANKTALVGVRVDTIADCTCGARN-----------FT 2345
            ||:..:.:|:|  .|.:..:.....:...|.:......|....|...|..:.           ||
Zfish   677 ECVLHSHVCDGESDCKDGSDEIDCDFNCEAGQFQCAHGRKCIDAKLVCDGKPQCQDFSDEKDCFT 741

  Fly  2346 KPESCRTTPCHNGGRCVDTRF--GPHCSCPVGYTGPRCQQTTRSFR--------GNGWAWYPPLE 2400
            :.:|| :..|.|..||:...|  .....|..|.....|...|:..:        .:|....||..
Zfish   742 RSKSC-SHRCDNKTRCIPENFLCDGETDCVDGTDESDCGYPTKVVKCESPSVLCRDGLLCVPPTS 805

  Fly  2401 MCDESHLSLEFITRK--PDGLIIYNGPIVPPERDETLI-------SDFIALEL------------ 2444
            :||         .:|  |||.            |||..       .||:..:.            
Zfish   806 LCD---------GKKDCPDGY------------DETFCFDRCPNSGDFLCKDRRKCVDKDLVCDG 849

  Fly  2445 ---------ERGYP-RLLIDFGSGTLELRVKTKKTLD-----------DGEWHRIDLFWDTESIR 2488
                     |.|.| :...:..||.|:.||.:|...|           |||              
Zfish   850 RSHCTDGSDEHGCPTKAAENSNSGPLKCRVGSKPCNDGRQCVLHTHVCDGE-------------- 900

  Fly  2489 MVVDFCKSAEIAEMEDGTPPEFDDMSCQARGQIPPFNEYLNVNAPLQVGGLYREQFDQSLYFWHY 2553
                       .:.:||:    |:..|..|.:...|.                            
Zfish   901 -----------KDCDDGS----DEQGCPNRCKADQFR---------------------------- 922

  Fly  2554 MPTAKGFDGCIRNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCA-QTETTARCWEHG-------N 2610
              .|.|     |..:...::.|.......|:....|......|. |.:...||....       :
Zfish   923 --CAHG-----RMCIDKKQVCDGTPQCQDRSDELNCFTRSHDCKHQCDNKTRCIPESFLCDGEKD 980

  Fly  2611 CVGSLSEARCHCRPGWTGPACNIPTIPTTFKAQSYVKYALSFEPDRFSTQVQLRFRTREEYGELF 2675
            ||.:..||.|             |:||....|.. :|......|..|..:........:......
Zfish   981 CVDATDEANC-------------PSIPDASNADP-LKTLGCRSPSMFCKETSKCMPESQLCDGKV 1031

  Fly  2676 RVSDQHNREYGILEIKDGHLHFRYNLNSLRTEEKDLWLNAIVVNDGQWHVVKVNRYGSAATLELD 2740
            ......:.::.|....|.. ||       ..::|...::..||.||..|.               
Zfish  1032 DCPSGADEQFCIYSCSDPD-HF-------LCKDKRKCVHKAVVCDGYSHC--------------- 1073

  Fly  2741 GGEGRRYNETFEFVGHQWLLVDKQEGVYAGGKAEYTGVRTFEVYADYQKSCL-DDIRLEGKHLPL 2804
                                        |.|..||. ..|..:..|.:..|| ...|.:||    
Zfish  1074 ----------------------------ADGSDEYQ-CPTCALQCDQKTVCLTKQQRCDGK---- 1105

  Fly  2805 PPAMNGTQ-----WGQATMARNLEKGCP-SNKPCS--------NVICPDPFECVDLWNVYEC--T 2853
            |...:|:.     .|....:.:|...|| .:|||.        :.:|....:|.|..:...|  .
Zfish  1106 PDCRDGSDEKDCYTGGVIASTSLPLRCPLGSKPCMDGKECVLLDHLCDGEKDCKDGSDERTCERK 1170

  Fly  2854 CGEGRIMSPDSKGCMDRN-------ECLDMPCMNGATCINLEPRLRY------RCI--------- 2896
            |.:|:......:.|:|..       :|.|.  .:.|.|:.|....|:      ||:         
Zfish  1171 CKKGQFQCSHGRKCIDMKFVCDGTPQCQDR--SDEANCMKLSDECRHQCDNKTRCVPETFLCDGE 1233

  Fly  2897 --CPDGFWGENCEL---------VQEGQTLKLSM 2919
              |.||....||.:         ...||.:.||:
Zfish  1234 KDCVDGTDEANCVVEPCSGDRFQCSNGQCVALSL 1267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637
Cadherin_repeat 1638..1741 CDD:206637
Cadherin_repeat 1762..1861 CDD:206637
Cadherin_repeat 1871..1966 CDD:206637
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:278437 8/31 (26%)
LamG 2385..2570 CDD:238058 37/234 (16%)
EGF_2 <2605..2631 CDD:285248 6/32 (19%)
Laminin_G_2 2665..2800 CDD:280389 19/135 (14%)
EGF_CA 2869..2907 CDD:238011 13/61 (21%)
Cadherin_C 2952..3088 CDD:279398
si:dkey-88l16.3XP_021335179.1 LDLa 17..52 CDD:238060
LDLa 56..91 CDD:238060
LDLa 100..130 CDD:238060
LDLa <170..192 CDD:238060
LDLa 199..232 CDD:238060
LDLa 246..281 CDD:238060
LDLa 285..320 CDD:238060
LDLa <334..359 CDD:238060
LDLa 369..404 CDD:238060
LDLa 411..444 CDD:238060
LDLa 453..488 CDD:238060
LDLa 492..527 CDD:238060
LDLa 575..610 CDD:238060
LDLa 620..650 CDD:238060
LDLa 665..700 CDD:238060 5/22 (23%)
LDLa 704..739 CDD:238060 4/34 (12%)
LDLa 748..778 CDD:238060 7/29 (24%)
LDLa 787..822 CDD:238060 12/55 (22%)
LDLa 829..862 CDD:238060 3/32 (9%)
LDLa 877..912 CDD:238060 10/63 (16%)
LDLa 916..951 CDD:238060 6/69 (9%)
LDLa 959..990 CDD:238060 7/30 (23%)
LDLa 1048..1082 CDD:238060 13/85 (15%)
LDLa <1095..1117 CDD:238060 7/25 (28%)
LDLa 1132..1167 CDD:238060 8/34 (24%)
LDLa 1171..1206 CDD:238060 7/36 (19%)
LDLa 1215..1245 CDD:238060 5/29 (17%)
LDLa 1250..1284 CDD:238060 4/18 (22%)
LDLa 1290..1324 CDD:238060
LDLa 1331..1366 CDD:238060
LDLa 1371..1402 CDD:238060
cEGF 1453..1474 CDD:315355
EGF_CA 1471..1512 CDD:214542
LY <1593..1620 CDD:214531
Ldl_recept_b 1650..1688 CDD:278487
LY 1672..1713 CDD:214531
LY 1721..1756 CDD:214531
LY <2004..2036 CDD:214531
FXa_inhibition 2105..2139 CDD:317114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.