DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and cdh15

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_997771.2 Gene:cdh15 / 565617 ZFINID:ZDB-GENE-030131-780 Length:792 Species:Danio rerio


Alignment Length:853 Identity:198/853 - (23%)
Similarity:334/853 - (39%) Gaps:219/853 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1503 TVIIHV-----KDVNDNPPVFERPTYRTQITE----------EDDRNLPKRVLQVTATDGDKDRP 1552
            |::..|     |..:.||.|..  .:|.::..          |:.::||:.::|:.:   ||...
Zfish    12 TIVCQVSSSRLKQSDANPAVLN--PWRHRVKRDWIIPPIRVLENSKHLPEDLVQIKS---DKIFT 71

  Fly  1553 QNIVYFLTGQGIDPDNPANSKFDINRTTGEIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGY 1617
            ..::|.|.|.|:|.|  ....|:|:..||.|...:||||::   ...::...||....||.|...
Zfish    72 GEVIYMLEGPGVDQD--PKGLFEIDEKTGWIKSKEPLDREK---HKSFKLKAFALSPSGERLESP 131

  Fly  1618 ADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVMTMTAVDYDDPNEGSNARLVYSIEKNVIE 1682
            ..:::.:.|.|||.|.|.|..:.|.:.|....|..||.:||||:|||:. .||.|.|||    |.
Zfish   132 TTIEIYVLDQNDNRPEFTQKEFIGTIPEFSVPGTSVMQVTAVDFDDPST-DNAALSYSI----IG 191

  Fly  1683 EETGSP------IFEIEPDTGVIKTAVCCLDRERTPDY--SIQVVAMDGGGLKGTGTASIRVKDI 1739
            :|...|      :|.|...||||......|||:....:  ::||..|.|.||..:..|.|.:.||
Zfish   192 QECDPPHGINKTMFGINNKTGVIYIRDVGLDRDVVQSFRLTLQVADMSGMGLTSSSRAIIHISDI 256

  Fly  1740 NDMPPQF---------TKDEWFTEVDETDGTALPEMPILTVTVHDEDETN----KFQYKVIDNSG 1791
            |:..|:|         .:::...||...:.|             |:|:..    :.:|.:::.||
Zfish   257 NNHAPKFQPTTYNMYAMENKLIAEVGRVNAT-------------DKDQRGGDNWRIKYTIVNPSG 308

  Fly  1792 YGADKFTMVRNNDGTGSLKIVQPLDYEDQLQSNGFRFRIQVNDKGEDNDNDKYHVAYSWVVVKLR 1856
            :.|.:...|.|.   |.:.:|:.||||.|.:     :::.|..:.|......|...:| ..|.:|
Zfish   309 HFAIRTDPVSNQ---GIISVVKSLDYEYQAE-----YKLIVKAENEVKLKSPYEQIHS-ATVTVR 364

  Fly  1857 DINDNK-PHFERANVEVSVFEDTKVGTELEKFKATDPDQGGKSKVSYSIDRSSDRQRQFAINQN- 1919
            .:|:|: |.|.:..::|:|.|....||.|....|.|||.   :|:.:.|.:..|  ...||:.: 
Zfish   365 VMNENEAPIFYKNPIKVTVPESVVPGTILVSDIAHDPDH---AKLRFEIIQDPD--EWLAIDHST 424

  Fly  1920 GSVTIQRSLD-REVVPRHQV---KILAIDDGSPPKTATATLTVIVQDINDNAPKFLKDYRPVLPE 1980
            |.:..:::.. |....|:.:   .:...|..:...:|||||.|.:.:.||..|..:.....|..:
Zfish   425 GQIMAKKNFKIRSPFVRNNIYSAVVKVTDQDADGISATATLEVNLWETNDYPPLLIPQSGTVCSD 489

  Fly  1981 HVPPRKVVEILATDDDDRSKSNGPPFQFRLDPSADDIIRASFKVEQDQKGAN------GDGMAVI 2039
            ..|.:..:.:.|.|:|             :.|.||..   :|.:......||      .:..||:
Zfish   490 RDPDKLGLLLSALDED-------------MSPQADPF---TFNIADQNMAANWTIITLNETHAVL 538

  Fly  2040 SSLRSFDREQQKEYMIPIVIKDHGSPAMTGTS--------------------------------T 2072
            ..|...:|   .|:.||:|:.|.|||::..::                                .
Zfish   539 QPLVDIER---GEFSIPVVVSDSGSPSLYSSALVNVTVCPCDSFGDCKSITAAIFGSKIGISFIA 600

  Fly  2073 LTVIIG------------------------------------DVNDNKMQPGSKDIFVYNYQGQS 2101
            |.:|||                                    |:.||        :|.|:.||..
Zfish   601 LMIIIGCIALLLVLLLLTVAVRSCTSQNIRKGGGLLVGGSDDDIRDN--------VFHYDEQGGG 657

  Fly  2102 PDTPIGRVYVYDLDDWDLPDKKFYWEAMEHPRFKLDEDSGMVTMRAGTR-EGRYHLRFKVYDRK- 2164
            .:..    ..:::|....|.     :.:..|.....:|.|:...:...| :..::|....|.|| 
Zfish   658 EEDE----EAFNIDFLRSPS-----DMLPAPASFFPQDCGLPRGKQPLRKDAPHYLPSPTYPRKP 713

  Fly  2165 -HTQTDIPANVTVTVREI-------PHEAVV-----NSGSV--RLSGIS--------DEDFIRVW 2206
             ...|||...:.|.:...       |::..:     ..|||  .||.|:        |.|::..|
Zfish   714 PGDPTDIEDFINVGLDAADNDPNVPPYDTALIYDYEGDGSVAGSLSSIASTGSDGDQDYDYLNDW 778

  Fly  2207 NYRTQSMS 2214
            ..|.:.::
Zfish   779 GPRFKKLA 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637 3/15 (20%)
Cadherin_repeat 1522..1630 CDD:206637 29/117 (25%)
Cadherin_repeat 1638..1741 CDD:206637 40/110 (36%)
Cadherin_repeat 1762..1861 CDD:206637 22/102 (22%)
Cadherin_repeat 1871..1966 CDD:206637 26/99 (26%)
Cadherin_repeat 1974..2083 CDD:206637 28/182 (15%)
EGF 2350..2380 CDD:278437
LamG 2385..2570 CDD:238058
EGF_2 <2605..2631 CDD:285248
Laminin_G_2 2665..2800 CDD:280389
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
cdh15NP_997771.2 E_set 45..144 CDD:298831 28/106 (26%)
Cadherin_repeat 152..259 CDD:206637 41/111 (37%)
Cadherin_repeat 267..370 CDD:206637 25/124 (20%)
Cadherin_repeat 378..474 CDD:206637 25/100 (25%)
E_set 482..574 CDD:298831 23/110 (21%)
Cadherin_C 639..790 CDD:279398 32/165 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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