DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN and cntnap2b

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_001289171.1 Gene:cntnap2b / 563345 ZFINID:ZDB-GENE-070912-26 Length:1315 Species:Danio rerio


Alignment Length:1220 Identity:230/1220 - (18%)
Similarity:371/1220 - (30%) Gaps:470/1220 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1714 YSIQVVAMDGGGLKGTGTASIRVKDINDMPPQFTKDEWFTEVDETDGTALPEMPILTVTVHDEDE 1778
            |...|::.||.|:........::|.:.|:.....|      ..:.||          |.:|.|.:
Zfish   177 YWADVISFDGQGVISYRFRQKKMKILKDVISLKFK------TSKGDG----------VLLHGEGQ 225

  Fly  1779 TN----------KFQYKVIDNSGYGADKFTMVRNND--GTGSLKIVQPLDYEDQLQSNGF-RFRI 1830
            ..          |.|.::    ..|::::..::.:.  .:|||     || :||..|... |:|.
Zfish   226 QGDYITLELRRAKLQLQI----NLGSNQYGSIQGHTSASSGSL-----LD-DDQWHSVLIERYRR 280

  Fly  1831 QVN-----------DKGE-DNDNDKYHVAYSWVVVKLRDINDNKPHF------------------ 1865
            .:|           ..|| |:.:..|.:.:..:.|..:..:..:.::                  
Zfish   281 SINFTLDQHKQSFRTNGEFDHLDLDYEITFGGMPVSAKPSSGGRENYIGCMEAIHYNGDNITNLA 345

  Fly  1866 ERANVEVSVFED-TKVGTELEKFKA-------------TDPD----------------------- 1893
            .|..|:.|.|.: |...||...|.|             ||.|                       
Zfish   346 RRRKVDTSSFHNLTFSCTESRTFPAFFNSTSSLQLPGRTDADTVSVRLQFRTWNPSGLLFFTPLM 410

  Fly  1894 QGG------KSKVSYSIDRSSDRQRQFAINQNGSVTIQRSLDREVVPRHQVKILAID-------D 1945
            .||      :.||:..|        ...:.:|..|.|...........|.|..||::       :
Zfish   411 PGGVEVSLVEGKVTVHI--------YVTLGKNTRVDISSGSGLNDGQWHSVHFLALESIAMLTIN 467

  Fly  1946 GSPPKTATATLTVIVQDINDNAPKFLKDYRP---VLPEHVPPRKVVEILATDDDDRSKSNGPPFQ 2007
            |....|..|.|.:   .|......|...|.|   :.|.....:..::::..||           |
Zfish   468 GDEMSTVRAALPM---QIRTGGDYFFGGYFPRTDLSPSQRSFQGCMQLIHVDD-----------Q 518

  Fly  2008 FRLDPSADDIIRASFKVEQDQKGANGDGMAVISSLRSFDREQQKEYMIPIVIKDHGSPAMTGTST 2072
            |....|.:..:..||      :..:.|..|:|      ||      .:|... :||........|
Zfish   519 FMDLQSVEQGVLGSF------ENVSLDMCAII------DR------CVPNHC-EHGGKCSQTEDT 564

  Fly  2073 L------TVIIGDVNDNKMQPGSKDIFVYNYQGQSPDTPIGRVYVYDLDDWDLPDKKFYWEAMEH 2131
            .      |...|....|.:...|.:  .|.:.|:|.||                    ||     
Zfish   565 FKCACEGTGYSGATCHNSVYEQSCE--EYKHLGRSSDT--------------------YW----- 602

  Fly  2132 PRFKLDEDSGMVTMRAGTREGRYHLRFKVYDRKHTQTDIPANVTVTVRE----------IPHEAV 2186
                :|.|.      :|:.|                   |..||..::|          :|.::.
Zfish   603 ----IDPDG------SGSLE-------------------PFRVTCNMKEDKVWTTIANDLPAQSS 638

  Fly  2187 VNSGSVRLSGISDEDFIRVWNYRTQSMSRSKMDRFRDKLADLLNTERENVDIFSVQLKRKHPPLT 2251
            |::|||     .::..:...||   |||                ||:.|....|.:|..:|    
Zfish   639 VSAGSV-----PEDKTVLTLNY---SMS----------------TEQVNAITSSAELCEQH---- 675

  Fly  2252 DVRFSAHGSPYYKPVRLNGIVLMHREEIEKDVGINITMVGIDECLYENQMCEGSCTNSLEISPLP 2316
                                                    :....|::|:..   ..|.::.|..
Zfish   676 ----------------------------------------VSYMCYKSQLLR---VPSPDVPPST 697

  Fly  2317 YMVNA--NKTALVGVRVDTIADCTCG-ARNFTKPESCRTTPCHNGGRCVDTRFGPHCSC------ 2372
            |.|..  .|....|.....:..|.|| .||                 |.|.|:  :|:|      
Zfish   698 YWVGRGNEKHFYWGGSGPGVQKCACGIERN-----------------CTDPRY--YCNCDADLRQ 743

  Fly  2373 --------------PVGY----------------TGP-RCQQTTRSFRGNGWAW----------- 2395
                          ||..                .|| |||       |:...|           
Zfish   744 WKEDAGMLMYKDHLPVSQVVVGDIYRSGSEAKLTVGPLRCQ-------GDRHYWNAASFNTPASY 801

  Fly  2396 --YPPLEMCDESHLSLEFITRKPDGLIIYN--GPIVPPERDETLISDFIALEL-ERGYPRLLIDF 2455
              :|.|:....:.:|..|.|....|:.:.|  .|            |||.||| .........|.
Zfish   802 LHFPTLQAETSADVSFYFKTSASHGVFLENLGNP------------DFIRLELSSASVVSFSFDV 854

  Fly  2456 GSGTLELRVKTKKTLDDGEWHRIDLFWDTESIRMVVDFCKSAEIAEMEDGTPPEFDDMSCQARGQ 2520
            |:|.:||.|::...|:|.:|||:      |:.|.:    |.|.:         ..|.:..:||..
Zfish   855 GNGLVELSVRSSTPLNDDQWHRV------EAERNI----KEAVL---------RVDKLYREARSA 900

  Fly  2521 IPPFNEYLNVNAPLQVGGLYREQFDQSLYFWHYMPTAKGFDGCIRNLVHNSKLYDL-----AHPG 2580
            .|..:..|.:.:.|.||....:               :||.||||:|..|....||     ..||
Zfish   901 PPQGHTRLRLFSQLFVGASGGQ---------------RGFLGCIRSLKVNGVTLDLEGRAKVTPG 950

  Fly  2581 LSRNSVAGCPQTEEVCAQTETTARCWEHGNCVGSLSEARCHC-RPGWTGPACNIPTIPTTFKAQS 2644
            :.......|         :.....|...|.|:...:...|.| :..:.||.|| ..:...|::.:
Zfish   951 VKPGCSGHC---------SSYGMHCQNGGKCIEKYNGYSCDCSQTAFDGPFCN-DDVGGYFESGT 1005

  Fly  2645 YVKYALSFEPDRFSTQVQ---------LRFRTREEYGELFRVSD---------QHNREYGILEIK 2691
            .|::.|..|....|..::         :...|.||....|..|:         ...::|..:.::
Zfish  1006 LVRFDLMSESSTSSPALKEGESAVLGIVGNLTHEELSFSFSTSNTPAVPIYISSKTQDYLAVVLR 1070

  Fly  2692 -DGHLHFRYNLNSLRTEEKDLWLNAIVVNDGQWHVVKVNRYGSAATLELD 2740
             :|.|..||||..|: |...:.||...:.:||.|.|.::|......|::|
Zfish  1071 HNGTLQIRYNLGGLK-EPFSISLNHRNMANGQPHNVNISRQERHIQLQVD 1119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637
Cadherin_repeat 1638..1741 CDD:206637 6/26 (23%)
Cadherin_repeat 1762..1861 CDD:206637 22/123 (18%)
Cadherin_repeat 1871..1966 CDD:206637 27/144 (19%)
Cadherin_repeat 1974..2083 CDD:206637 21/117 (18%)
EGF 2350..2380 CDD:278437 9/66 (14%)
LamG 2385..2570 CDD:238058 46/200 (23%)
EGF_2 <2605..2631 CDD:285248 7/26 (27%)
Laminin_G_2 2665..2800 CDD:280389 23/86 (27%)
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
cntnap2bNP_001289171.1 FA58C 33..174 CDD:238014
FA58C 44..175 CDD:214572
Laminin_G_2 210..338 CDD:280389 25/153 (16%)
Laminin_G_2 395..518 CDD:280389 23/144 (16%)
EGF_CA 544..579 CDD:238011 9/47 (19%)
LamG 792..935 CDD:238058 44/188 (23%)
EGF_CA 959..993 CDD:238011 8/42 (19%)
LamG 1040..1177 CDD:214598 21/81 (26%)
4.1m 1266..1284 CDD:128590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.