DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN and shg

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster


Alignment Length:2165 Identity:622/2165 - (28%)
Similarity:861/2165 - (39%) Gaps:777/2165 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   962 NDNKPVFKDCSTYYPKVEEGAPNGSPVIKVVATDEDKGVNGQVKYSIVQQPNQKGTKFTVDEETG 1026
            ::.||.||:|:.|.|||:|..|..:.|:.|.|.|.|.  :..::|||||.|.:: .||.::..||
  Fly    81 DNRKPAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDP--DQVIRYSIVQSPFER-PKFFINPSTG 142

  Fly  1027 EVSTNKVFDR-EGDDGKFVSVTVKATDQGDPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQD 1090
            .:.|...||| |....|||.|||:|||.|.|.|:.||:|.|.|.|:|||.|.|::.:|.|::.::
  Fly   143 VIFTTHTFDRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARYDESMSEN 207

  Fly  1091 ASIGTNILRVSASDEDADNNGAIVYSLTAPFNPNDLEYFEIQAESGWIVLKKPLDGCYPRDRYRL 1155
            |.....::.:||||.|..||..:.|.:   ....|.:||:|..|||.|.||:|:|. .|...|.:
  Fly   208 AQPDAVVMTISASDFDDGNNSLVEYEI---LRERDFQYFKIDKESGIIYLKRPIDK-RPGQSYAI 268

  Fly  1156 RVSASD-KGTPASAADVDVELDVVDRNNKPPIWDKSIYGPIHIRENVTVGT-VVTSVKASSGIEG 1218
            .|.|.: ...|...|.::|.:.||:.:.|||.:...|..||:::||:...| .:.:::|.|.:..
  Fly   269 IVRAYNVVPDPPQDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKENLKNFTHPIATLRAVSNMPD 333

  Fly  1219 NPTVFYRLMPGSTAQTNKFHTFYLQQRPDNGDTWADIKVNHPLDYESIKEYNLTIRVENNGAQQL 1283
            .|.|.:.|..|.|.|||..:||...|..:.    ..|.:...||||:|.:|.||:.|.|  ..:|
  Fly   334 KPEVIFELNTGRTEQTNSKNTFVFNQIGNE----VTISLGKTLDYEAITDYTLTMIVRN--THEL 392

  Fly  1284 ASEATVYIMLEDVNDEIPLFTEREQETVLEGEPIGTKVTQVNAIDKDGTFPNNQVYYYIVDSPRN 1348
            .:|..:.|.:|||||.||.:||.:..|:||.||.||.|.||.|.|.|||..||.|.:.:.|:   
  Fly   393 GTEHQIKIQVEDVNDNIPYYTEVKSGTILENEPPGTPVMQVRAFDMDGTSANNIVSFELADN--- 454

  Fly  1349 EGKEFFEINLQSGEIFTKTVFDREKKGAYALEVEARDGAPSARPNSNGPNSVTKFIRIGIADKND 1413
              :|:|.|:..:|.|...|.||||::..|.::|.|.|.:||:..::..||...:..||.|.||||
  Fly   455 --REYFTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKND 517

  Fly  1414 NPPYFDKSLYEAE-VDENEDIQHTVLTVTAKDHDESSRIRYEITSGNIGGAFAVKNMTGAIYVAG 1477
            :.|:|.:..|.|| :.|:.:....|:.|.|:|.|.:|:|.|.|.|||:|.||.:...||.|.|..
  Fly   518 HKPHFQQDKYLAERLLEDANTNTEVIEVKAEDEDNASQILYSIESGNVGDAFKIGLKTGKITVNQ 582

  Fly  1478 ALDYETRRRYELRLAASDNLKENYTTVIIHVKDVNDNPPVFERPTYRTQITEE---DDRNLPKRV 1539
            .|||||...|||::.|.|.:.::||||:|.::|||||||||:: .|...|.||   ||     .:
  Fly   583 KLDYETITEYELKVRAFDGIYDDYTTVVIKIEDVNDNPPVFKQ-DYSVTILEETTYDD-----CI 641

  Fly  1540 LQVTATDGD-KDR--PQNIVYFLTGQGIDPDNPANSKFDINRTT----GEIFVLKPLDRDQPNGR 1597
            |.|.|.|.| |||  .|:|||.:            .:.|.||.|    |.:.::|.||||.|||.
  Fly   642 LTVEAYDPDIKDRNADQHIVYSI------------HQNDGNRWTIDNSGCLRLVKTLDRDPPNGH 694

  Fly  1598 PQWRFTVFAQDEGGEG--LVGYADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVMTMTAVD 1660
            ..|:..:.|.||.|.|  :....:|.|.|||||||||..                          
  Fly   695 KNWQVLIKANDEDGVGTTVSTVKEVTVTLKDINDNAPFL-------------------------- 733

  Fly  1661 YDDPNEGSNARLVYSIEKNVIEEETGSPIFEIEPDTGVIKTAVCCLDRERTPDYSIQVVAMDGGG 1725
                                                                             
  Fly   734 ----------------------------------------------------------------- 733

  Fly  1726 LKGTGTASIRVKDINDMPPQFTKDEWFTEVDETDGTALPEMPILTVTVHDEDETNKFQYKVIDNS 1790
                         ||:||..     |                                       
  Fly   734 -------------INEMPVY-----W--------------------------------------- 741

  Fly  1791 GYGADKFTMVRNNDGTGSLKIVQPLDYEDQLQSNGFRFRIQVNDKGEDNDNDKYHVAYSWVVVKL 1855
                                                          ::|.|              
  Fly   742 ----------------------------------------------QENRN-------------- 746

  Fly  1856 RDINDNKPHFERANVEVSVFEDTKVGTELEKFKATDPDQGGKSKVSYSIDRSSDRQRQFAINQNG 1920
                                                                             
  Fly   747 ----------------------------------------------------------------- 746

  Fly  1921 SVTIQRSLDREVVPRHQVKILAIDDGSPPKTATATLTVIVQDINDNAPKFLKDYRPVLPEHVPPR 1985
                                                                           |.
  Fly   747 ---------------------------------------------------------------PG 748

  Fly  1986 KVVEILATDDDDRSKSNGPPFQFRLDPSADDIIRASFKVEQDQKGANGDGMAVISSLRSFDREQQ 2050
            .||::.|.|.||...:..  |.|.:|..|...|:..|.::.|...||          ..||||.|
  Fly   749 HVVQLQANDYDDTPGAGN--FTFGIDSEATPDIKTKFSMDGDYLHAN----------VQFDREAQ 801

  Fly  2051 KEYMIPIVIKDHGSPAMTGTSTLTVIIGDVNDNKMQPGSKDIFVYNYQGQSPDTPIGRVYVYDLD 2115
            |||.|||.|.|.|.|..:..|.|.::|||||||.|..||..||:|||:|::|:|.||||:|.|||
  Fly   802 KEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLD 866

  Fly  2116 DWDLPDKKFYWEAMEHPRFKLDEDSGMVTMRAGTREGRYHLRFKV-----YDRKHTQTDIPANVT 2175
            ||||.||.|.|:.:.|.:|:|:..:||:||...|.||.|.|.|.|     :..:|:   :.|.||
  Fly   867 DWDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHS---VDAYVT 928

  Fly  2176 VTVREIPHEAVVNSGSVRLSGISDEDFIRVWNYRTQSMSRSKMDRFRDKLADLLNTERENVDIFS 2240
            |.|||:|.|||..|||:|...::.|:||.|........:.|..||.:..||.|.||...|||:|:
  Fly   929 VVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFT 993

  Fly  2241 VQLKRKHPPLTDVRFSAHGSPYYKPVRLNGIVLMHREEIEKDVGINITMVGIDECLYENQMCEGS 2305
            |.....|  ..||||||||||||.|.:|||||..:::.:|.::.:.:.||.|||||.|...||.|
  Fly   994 VLQNENH--TLDVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEES 1056

  Fly  2306 CTNSLEISPLPYMVNANKTALVGVRVDTIADCTCGARNFTKPESCRTTPCHNGGRCVDTRFGPH- 2369
            |||.|..|.:|||:.:|.|:.|||.....|.|.|.|....:        |.|||   ..|:|.: 
  Fly  1057 CTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRR--------CLNGG---SPRYGEND 1110

  Fly  2370 -CSCPVGYTGPRCQQTTRSFRGNGWAWYPPLEMCDESHLSLEFITRKPDGLIIYNGPIVPPERDE 2433
             |.|..|:|||.|:..:.:|.|:|:|:|.|:..|:.:.:|||...:...|||:|.||:   ..:.
  Fly  1111 VCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPL---NFNP 1172

  Fly  2434 TL-ISDFIALELERGYPRLLIDFGSGTLELRVKTKKTLDDGEWHRIDLFWDTESIRMVVDFCKSA 2497
            .| ||||:||||:.|||.|.:|:|||.:.:|.:..|.:.| ..:::|:.....||.|.||.|:.:
  Fly  1173 LLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVAD-RTYQLDIILQRTSIEMTVDNCRLS 1236

  Fly  2498 EIAEMEDGTPPEFDDMSCQARG-QIPPFNEYLNVNAPLQVGG--LYREQFDQSLYFWHYMPTAKG 2559
                            :||..| .|.| ||:||||||||:||  :..||..:.|. |.::|..||
  Fly  1237 ----------------TCQTLGAPIGP-NEFLNVNAPLQLGGTPVDLEQLGRQLN-WTHVPNQKG 1283

  Fly  2560 FDGCIRNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCAQTETTARCWEHGNCVGSLSEARCHCRP 2624
            |.||||||..|.:.|:|..|.:.||..:||.|:                                
  Fly  1284 FFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQS-------------------------------- 1316

  Fly  2625 GWTGPACNIPTIPTTFKAQSYVKYALSFEPDRFSTQVQLRFRTREEYGELFRVSDQHNREYGILE 2689
                                 |..|.||..||                                 
  Fly  1317 ---------------------VAVAFSFGIDR--------------------------------- 1327

  Fly  2690 IKDGHLHFRYNLNSLRTEEKDLWLNAIVVNDGQWHVVKVNRYGSAATLELDGGEGRRYNETFEFV 2754
                                    |.|:                                     
  Fly  1328 ------------------------NFII------------------------------------- 1331

  Fly  2755 GHQWLLVDKQEGVYAGGKAEYTGVRTFEVYADYQKSCLDDIRLEGKHLPLPPAMNGTQWGQATMA 2819
                                                                             
  Fly  1332 ----------------------------------------------------------------- 1331

  Fly  2820 RNLEKGCPSNKPCSNVICPDPFECVDLWNVYECTCGEGRIMSPDSKGCMDRNECLDMPCMNGATC 2884
                                                                             
  Fly  1332 ----------------------------------------------------------------- 1331

  Fly  2885 INLEPRLRYRCICPDGFWGENCELVQEGQTLKLSMGALAAILVCLLIILILVLVFVVYNRRREA- 2948
                                                   ||:|||.::||::|..||..:::.. 
  Fly  1332 ---------------------------------------AIIVCLALLLIILLAVVVQKKQKNGW 1357

  Fly  2949 HIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPMPPELAPMKMPIMYPVMTLMPG 3013
            |.|   ..||:||.||||:||||||.| |.:|:..|:..   |...|.. .|.|.........|.
  Fly  1358 HEK---DIDDIRETIINYEDEGGGERD-TDYDLNVLRTQ---PFYEEKL-YKDPHALQGNMRDPN 1414

  Fly  3014 QEPNVGMFIEEHKKRADGDPNAPPFDDLRNYAYEGGGSTAGSLSSLASGTDDEQQEYDYLGAWGP 3078
            ..|::..|:.:.|:..|.|..|...||:|:|||||.|::.||||||||.|||....:|||..:||
  Fly  1415 DIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGP 1479

  Fly  3079 RFDKLANMYGPEAPNPHNTE 3098
            ||.|||:|||.|   |.:|:
  Fly  1480 RFRKLADMYGEE---PSDTD 1496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637 0/1 (0%)
Cadherin_repeat 973..1074 CDD:206637 45/101 (45%)
Cadherin_repeat 1083..1166 CDD:206637 27/83 (33%)
Cadherin_repeat <1219..1298 CDD:206637 28/78 (36%)
Cadherin_repeat 1310..1414 CDD:206637 43/103 (42%)
Cadherin_repeat 1423..1514 CDD:206637 41/91 (45%)
Cadherin_repeat 1522..1630 CDD:206637 44/119 (37%)
Cadherin_repeat 1638..1741 CDD:206637 1/102 (1%)
Cadherin_repeat 1762..1861 CDD:206637 2/98 (2%)
Cadherin_repeat 1871..1966 CDD:206637 0/94 (0%)
Cadherin_repeat 1974..2083 CDD:206637 38/108 (35%)
EGF 2350..2380 CDD:278437 11/31 (35%)
LamG 2385..2570 CDD:238058 74/188 (39%)
EGF_2 <2605..2631 CDD:285248 0/25 (0%)
Laminin_G_2 2665..2800 CDD:280389 2/134 (1%)
EGF_CA 2869..2907 CDD:238011 0/37 (0%)
Cadherin_C 2952..3088 CDD:279398 60/135 (44%)
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 45/100 (45%)
Cadherin_repeat 200..292 CDD:206637 30/95 (32%)
CA 332..410 CDD:214520 30/83 (36%)
Cadherin_repeat 417..518 CDD:206637 43/105 (41%)
Cadherin_repeat 531..619 CDD:206637 38/87 (44%)
Cadherin_repeat 627..729 CDD:206637 44/118 (37%)
Cadherin_repeat 736..834 CDD:206637 43/341 (13%)
LamG 1127..1294 CDD:238058 74/188 (39%)
Cadherin_C 1358..1489 CDD:279398 62/138 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464699
Domainoid 1 1.000 201 1.000 Domainoid score I2960
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D3586at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.850

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