DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and Pcdha8

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_957695.1 Gene:Pcdha8 / 353235 MGIID:2681879 Length:946 Species:Mus musculus


Alignment Length:1080 Identity:224/1080 - (20%)
Similarity:372/1080 - (34%) Gaps:418/1080 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   660 IPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE--DLRQPHV 722
            :|::|.....::.|........::.|::..:.: .|||       :.::|::|:.:  :| .|.:
Mouse     8 VPDDQLLVLSLLLIAVWEVGSGQLHYSIPEEAK-HGTF-------VGRIAQDLELQLPEL-VPGL 63

  Fly   723 YSLIVTATEDSGGFSTSVDLT------------------------------------------IR 745
            :.|      ||.||...:::.                                          :.
Mouse    64 FQL------DSKGFGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVE 122

  Fly   746 VTDVNDNAPKFE-------LPDYQAHNVDEDIPL-GTSILRVKAMDSDSGSNAEIEY-LVSDDHF 801
            |.|:|||.|.|.       :|  ::..:|...|| |.|       |:|.||||.:.| |.:::||
Mouse   123 VRDINDNPPMFPATQKALFIP--ESRLLDSRFPLEGAS-------DADVGSNALLTYRLSTNEHF 178

  Fly   802 AVD---------SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKNKNDEEPK 857
            ::|         ..|::: .|.||.: ..|....::||.|.|:|                     
Mouse   179 SLDVPPNHEQVKPLGLVL-RKPLDRE-EAAEIRLLLTATDGGKP--------------------- 220

  Fly   858 FSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVRFGFVGGGTSSGQFVIEDITGVIRLHNKAISL 922
                                                              ::||.::|       
Mouse   221 --------------------------------------------------ELTGTVQL------- 228

  Fly   923 DKDKYELNVTAMDDGSCCVNGDQTIHTSTAVVVVFITDVNDNKPVFKDCSTYYPKVEEGAPNGSP 987
                                            ::.:.|||||.||| |.|.|..|:.|..||||.
Mouse   229 --------------------------------LITVLDVNDNAPVF-DRSLYTVKLPENVPNGSL 260

  Fly   988 VIKVVATDEDKGVNGQVKYSIVQQPNQK-GTKFTVDEETGEVSTNKVFDREGDDGKFVSVTVKAT 1051
            ||||.|:|.|:||||.|.||.....:.. .:||.:|..:||::...:.|.|  :.|...:.::|.
Mouse   261 VIKVNASDLDEGVNGDVMYSFSSDVSSDIKSKFHMDTVSGEITVIGIIDFE--ESKAYKIPLEAR 323

  Fly  1052 DQGDPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYS 1116
            |:|.|.|.|.|:..||:.|.|||.|..:.:.....||:||.:|..|..:|..|.|:..||.:..|
Mouse   324 DKGLPPLIGHCTVLVEVVDANDNAPQLNVKTLWLPVKEDAQLGKIIALISVIDLDSGINGQVTCS 388

  Fly  1117 LTAPFNPNDLEYFEIQAESGWIVLKKPLDGCYPRDRYRLRVSASDKGTPASAADVDVELDVVDRN 1181
            ||                                                              |
Mouse   389 LT--------------------------------------------------------------N 391

  Fly  1182 NKPPIWDKSIYGPIHIRENVTVGTVVTSVKASSGIEGNPTVFYRLMPGSTAQTNKFHTFYLQQRP 1246
            :.|                                       ::|:       :.|..:|     
Mouse   392 HVP---------------------------------------FKLV-------STFKNYY----- 405

  Fly  1247 DNGDTWADIKVNHPLDYESIKEYNLTIRVENNGAQQLASEATVYIMLEDVNDEIPLFTEREQET- 1310
                   .:.::..||.|:|..|::.:...:.|:..|.:.|:|.:.:.||||..|.|.:.|... 
Mouse   406 -------SLVLDSALDRETISNYDVIVTARDGGSPSLLATASVSVEVADVNDNAPAFAQPEYTVF 463

  Fly  1311 VLEGEPIGTKVTQVNAIDKDGTFPNNQVYYYIVDSPRNEGK----EFFEINLQSGEIFTKTVFDR 1371
            |.|..|.|..:..|:|:|.|.. .|..|.|.:|:  |..|:    .:..::.:||::|.....|.
Mouse   464 VKENNPPGAHIFTVSAVDADAQ-ENALVSYSLVE--RRVGERLLSSYVSVHAESGKVFALQPLDH 525

  Fly  1372 EKKGAYALEVEARD-GAPSARPNSNGPNSVTKFIRIGIADKNDNPPYF-------DKSLYEAEVD 1428
            |:......:|.||| |.|:...|      ||  :::.:.|:|||.|..       ...::...:.
Mouse   526 EELELLQFQVSARDAGVPALGSN------VT--LQVFVLDENDNVPMLLGSGTGGSDGVFNQLLS 582

  Fly  1429 ENEDIQHTVLTVTAKDHDE--SSRIRYEITS--GNIGGAFAVKNMTGAIYVAGALDYETRRRYEL 1489
            .:.|..|.|..|.|.|.|.  ::.:.||:.|  |::...|.|...||.|....:||.....|..|
Mouse   583 RSVDPGHVVAKVRAVDADSGYNAWLSYELLSWPGSMRSPFRVGLYTGEISTTRSLDETDGTRQRL 647

  Fly  1490 RLAASDNLKENYT---TVIIHVKDVNDNPPVFERPTYRTQITEED--DRN-------------LP 1536
            .:...|:.:...|   ||::.:.:....|....|.:....:.|..  |.|             |.
Mouse   648 LVLVKDHGEPPLTATVTVLVSLVESGQAPKTSSRSSVGVTVPEPSLVDVNVYLIIAICAVSSLLV 712

  Fly  1537 KRVLQVTA-------TDG--------------------DKDRPQNIVYFLTGQGID--------- 1565
            ..:|..||       |.|                    .:.|.|.:   .:|:|..         
Mouse   713 LTLLLYTALRCSATPTGGACGSGKPMLVCSSAAGTWSYSQQRRQRV---CSGEGPPKTDLMAFSP 774

  Fly  1566 --PDNPANSKFDINRTTGEIFVLKPLDRDQPNGRPQWRFT 1603
              |..|.:::..::..:.|    ||   .|||  |.||::
Mouse   775 GLPPCPGSAEPSVSLDSSE----KP---RQPN--PDWRYS 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637 19/135 (14%)
Cadherin_repeat 765..853 CDD:206637 26/98 (27%)
Cadherin_repeat 862..964 CDD:206637 6/101 (6%)
Cadherin_repeat 973..1074 CDD:206637 40/101 (40%)
Cadherin_repeat 1083..1166 CDD:206637 14/82 (17%)
Cadherin_repeat <1219..1298 CDD:206637 14/78 (18%)
Cadherin_repeat 1310..1414 CDD:206637 30/109 (28%)
Cadherin_repeat 1423..1514 CDD:206637 24/97 (25%)
Cadherin_repeat 1522..1630 CDD:206637 24/135 (18%)
Cadherin_repeat 1638..1741 CDD:206637
Cadherin_repeat 1762..1861 CDD:206637
Cadherin_repeat 1871..1966 CDD:206637
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:278437
LamG 2385..2570 CDD:238058
EGF_2 <2605..2631 CDD:285248
Laminin_G_2 2665..2800 CDD:280389
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
Pcdha8NP_957695.1 E_set 30..111 CDD:298831 13/95 (14%)
Cadherin_repeat 140..238 CDD:206637 33/218 (15%)
Cadherin_repeat 247..346 CDD:206637 40/100 (40%)
Cadherin_repeat 359..451 CDD:206637 31/211 (15%)
Cadherin_repeat 459..561 CDD:206637 31/112 (28%)
Cadherin_repeat 581..670 CDD:206637 24/88 (27%)
Cadherin_tail 795..938 CDD:292596 7/16 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 63 1.000 Domainoid score I10181
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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