DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and Cntnap4

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_001100902.1 Gene:Cntnap4 / 307865 RGDID:1306459 Length:1310 Species:Rattus norvegicus


Alignment Length:975 Identity:195/975 - (20%)
Similarity:311/975 - (31%) Gaps:319/975 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  2143 VTMRAGTREGRYHLRFKVYDRKHTQTDIPANVTVTVREIPHEAVVNSGSVRLSGISDEDFIRVWN 2207
            :|..||..:|::|.......|.|....:..:::.....:..|.|.:.|.....|..|:.|     
  Rat   444 ITAGAGLDDGQWHSVSLSAKRNHLTVVVDGHISPASPWLGPEQVNSGGIFYFGGCPDKSF----- 503

  Fly  2208 YRTQSMSRSKMDRF---------RDKLADLLNTERENVDIFS-VQL------------------- 2243
               .|..:|.:..|         :||:.|||..::.::..|| :|:                   
  Rat   504 ---GSRCKSPLGGFQGCMRLISIQDKMVDLLAVQQGSLGNFSDLQIDSCGISDRCLPNSCEHGGE 565

  Fly  2244 -----KRKHPPLTDVRF---SAHGSPY------YK-----------------PVR---------- 2267
                 ...|...|:..:   :.|.|.|      ||                 |:|          
  Rat   566 CSQSWSTFHCNCTNTGYTGATCHSSVYEQSCEAYKHRGNASGFYYIDSDGSGPLRPFLLYCNMTE 630

  Fly  2268 -------LNGIVLM-----HREEIEKDVGINITMVG--------IDECLYE-NQMCEGS-CTNSL 2310
                   .||..||     |.|.:...|...:..:|        .:.|..| ...|:.| ..|..
  Rat   631 TAWTVIHHNGSDLMRVRNAHSENVHTGVFEYVASMGQLQASINRAEHCQQELVYYCKKSRLVNQQ 695

  Fly  2311 EISPLPYMV-NANKTALV-GVRVDTIADCTCGARNFTKPESCRTTPCHNGGRCVDTRFGPHCSC- 2372
            :.||..:.| ..|:|... |..:.....||||..                |.|:|.::  ||:| 
  Rat   696 DGSPRSWWVGRTNETQTYWGGSLPMPQKCTCGLE----------------GNCIDAQY--HCNCD 742

  Fly  2373 -----------------------------------------PVGYTGPRCQQTTRSFRGN-GWAW 2395
                                                     |:...|.|......||... .:..
  Rat   743 ADRNEWTNDTGFLSYKEHLPVTKIVITDTGRPHSEAAYKLGPLLCRGDRPFWNAASFNTEASYLH 807

  Fly  2396 YPPLEMCDESHLSLEFITRKPDGLIIYN-GPIVPPERDETLISDFIALELERGYPRLL---IDFG 2456
            :|.......:.:|..|.|....|:.:.| |           |:|||.:||..  |..:   .|.|
  Rat   808 FPTFHGELSADVSFYFKTTALSGVFLENLG-----------ITDFIRIELRS--PTTVTFSFDVG 859

  Fly  2457 SGTLELRVKTKKTLDDGEWHRIDLFWDTESIRMVVDFCKSAEIAEMEDGTPPEFDDMSCQARGQI 2521
            :|..||.|.:....:|.:||.:.:..:|:...:.||        |:    ||:.         |.
  Rat   860 NGPFELSVHSPTHFNDNQWHHVRVERNTKEASLQVD--------EL----PPKI---------QA 903

  Fly  2522 PPFNEY--LNVNAPLQVGGLYREQFDQSLYFWHYMPTAKGFDGCIRNLVHNSKLYDLAH-----P 2579
            .|.:.:  |.:|:.|.|||....|              :||.||||:|..|....||..     |
  Rat   904 APTDGHVLLQLNSQLFVGGTATRQ--------------RGFLGCIRSLQLNGMALDLEERATVTP 954

  Fly  2580 GLSRNSVAGCPQTEEVCAQTETTARCWEH-GNCVGSLSEARCHC-RPGWTGPACNIPTIPTTFKA 2642
            |:.......|....::|          .| |.|....|...|.| ...:.||.|: ..|...|.:
  Rat   955 GVQPGCRGHCGSYGKLC----------RHGGKCREKPSGFFCDCSSSAYAGPFCS-KEISAYFGS 1008

  Fly  2643 QSYVKY---------------ALSFEPD-RFSTQ-VQLRFRTREEYGELFRVSDQHNREYGILEI 2690
            .|.|.|               |.||..| :...: |:..|||......|..:|..:.....::..
  Rat  1009 GSSVIYNFQENYSLSKNSSFHAASFHGDMKLGRETVKFNFRTTRAPSLLLYMSSFYKEYLSVIIA 1073

  Fly  2691 KDGHLHFRYNLNSLRTEEKD-LWLNAIVVNDGQWHVVKVNRYGSAATLELDGGEGRRYNETFEFV 2754
            |:|.|..||.||  :..|.| :..:...:.|||.|.:|::|......:|:|....|   :|:...
  Rat  1074 KNGSLQIRYRLN--KYHEPDVISFDLKSMADGQLHHLKISREEGMVFVEIDENTRR---QTYLSS 1133

  Fly  2755 GHQWLLVDKQEGVYAGGKAEYTGV--RTFEVYADYQKSCLDDIRLEGKHL-PLPPAMNGTQWGQA 2816
            |.::..|   :.:..|...||:.|  .|....|.....||..::.  .|: ||..|:...:....
  Rat  1134 GTEFSAV---KSLVLGRMLEYSDVDQETALAAAHGFTGCLSAVQF--SHIAPLKAALQPGRPAPV 1193

  Fly  2817 TMARNL-EKGCPSNKPCSNVICPDPFECVDLWNVYECTCGEGRIMSPDSKGCMDRNECLDMPCMN 2880
            |:..:: |..|.:  |...                :.|..|......|..|.||..|.|.....:
  Rat  1194 TVTGHVTESSCVA--PAGT----------------DATSRERTHSFADHSGTMDDREPLTHAIKS 1240

  Fly  2881 GATCINLEPRLRYRCICPDGFWGENCELVQEGQTLKLSMGALAAILVCLLIILILVLVFVVYNRR 2945
            .:..|                                  |.|.|:::.:|:.:..:.|.:...:|
  Rat  1241 DSAVI----------------------------------GGLIAVVIFILLCVSAIAVRIYQQKR 1271

  Fly  2946  2945
              Rat  1272  1271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637
Cadherin_repeat 1638..1741 CDD:206637
Cadherin_repeat 1762..1861 CDD:206637
Cadherin_repeat 1871..1966 CDD:206637
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:278437 8/71 (11%)
LamG 2385..2570 CDD:238058 47/191 (25%)
EGF_2 <2605..2631 CDD:285248 8/27 (30%)
Laminin_G_2 2665..2800 CDD:280389 34/137 (25%)
EGF_CA 2869..2907 CDD:238011 4/37 (11%)
Cadherin_C 2952..3088 CDD:279398
Cntnap4NP_001100902.1 FA58C 56..178 CDD:238014
FA58C 57..179 CDD:214572
LamG 210..343 CDD:214598
Laminin_G_2 400..526 CDD:280389 16/89 (18%)
EGF 555..586 CDD:278437 2/30 (7%)
FReD 597..>645 CDD:294064 7/47 (15%)
LamG 796..940 CDD:238058 47/191 (25%)
Laminin_G_2 1048..1178 CDD:280389 34/139 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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