DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and Dsg1

DIOPT Version :10

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_001419356.1 Gene:Dsg1 / 291755 RGDID:1309925 Length:1060 Species:Rattus norvegicus


Alignment Length:532 Identity:141/532 - (26%)
Similarity:234/532 - (43%) Gaps:103/532 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1479 LDYETRRRYELRLAASDNLKENYTTVIIHVKDVNDNPPVFERPTYRTQITE---------EDDRN 1534
            :|:.:.||..|.||....|:.| :...|.|:|.|......:..:.|.|..|         |.:.|
  Rat     1 MDWHSFRRAALLLAFLVVLEVN-SEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDN 64

  Fly  1535 LPKRVLQVTATDGDKDRPQNIVYFLTGQGIDPDNPANSKFDINRTTGEIFVLKPLDRDQPNGRPQ 1599
            ..:..:....:|...::|  :.|.::|.||  |.|....|.||:.||||.:...:||:.   .|.
  Rat    65 SKRNPIAKIHSDCAANQP--VTYRISGVGI--DQPPYGIFIINQKTGEINITSIVDREV---TPF 122

  Fly  1600 WRFTVFAQDEGGEGLVGYADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVMTMTAVDYDDP 1664
            :.....|.:..|:.|....:::|.:.|||||.|:|....:.|.:.||..|..:||.:.|.|.|:|
  Rat   123 FIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEP 187

  Fly  1665 NEGSNARLVYSIEKNVIEEETGSPIFEIEPDTGVIKTAVCCLDRERTPDYSIQVVA--MDGG--G 1725
            | ..|:.:.:.|   |.:|.:.:|:|.|...||.|:|....||||:...||:.|..  .|||  |
  Rat   188 N-NLNSLIAFKI---VRQEPSEAPMFIINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADG 248

  Fly  1726 LKGTGTASIRVKDINDMPPQFTKDEWFTEVDETDGTALPEMPILTVTVHDEDETNKFQYKVIDNS 1790
            :......||.:.|:||..|...:..:..:::|.             .:|    :|..|::|||..
  Rat   249 MSAECECSISILDVNDNIPYLDQSSYDIKIEEN-------------ALH----SNLQQFRVIDLD 296

  Fly  1791 GYGADKFT----MVRNNDG------------TGSLKIVQPLDYE--DQLQSNGFRFRIQVNDKGE 1837
            ...:|.:.    .|..|:|            .|:||:|:|||||  .:||     ..|.|.:..|
  Rat   297 EEYSDNWKAVIFFVTGNEGNWFEIEMNERTNVGTLKVVKPLDYEAMQKLQ-----LSIGVRNVAE 356

  Fly  1838 DNDN--DKYHVAYSWVVVKLRDINDNKPHFERANVEVSVFE--------------DTKVGTELEK 1886
            .:.:  .:|.:..:.:.||:.::           ||.|||.              :.:||    :
  Rat   357 FHQSILSQYTLTVTMITVKVLNV-----------VEGSVFRPGSKTFVVHSRMDANYRVG----E 406

  Fly  1887 FKATDPDQGGKS-KVSYSIDRSSDRQRQFAINQNGSVTIQRSLDRE----VVPRHQVKILAIDDG 1946
            |.|||.|.|..| .|.|.:..:.: ......::.|.:|::..:..|    :..|::..:|:||| 
  Rat   407 FTATDLDTGMTSTNVRYVMGNNPE-GLLVVDSKTGIITLRNRVTMEQYQRLNGRYEGTMLSIDD- 469

  Fly  1947 SPPKTATATLTV 1958
            |..:|.|.|:.:
  Rat   470 SLQRTCTGTIII 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
CA_like 449..541 CDD:481204
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637 12/34 (35%)
Cadherin_repeat 1522..1630 CDD:206637 30/116 (26%)
Cadherin_repeat 1638..1741 CDD:206637 36/106 (34%)
CA 1770..1863 CDD:214520 27/112 (24%)
Cadherin_repeat 1871..1966 CDD:206637 27/107 (25%)
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:394967
LamG 2385..2570 CDD:238058
EGF_2 2605..2631 CDD:400365
LamG 2637..2797 CDD:238058
EGF_CA 2869..2907 CDD:238011
CADH_Y-type_LIR 3029..3088 CDD:460041
Dsg1NP_001419356.1 CA 73..155 CDD:214520 27/88 (31%)
Cadherin_repeat 165..265 CDD:206637 36/103 (35%)
Cadherin 274..377 CDD:394985 28/124 (23%)
Cadherin_repeat 401..483 CDD:206637 23/87 (26%)
CADH_Y-type_LIR 729..784 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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