DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN and Dsg1

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:XP_038953306.1 Gene:Dsg1 / 291755 RGDID:1309925 Length:1048 Species:Rattus norvegicus


Alignment Length:1054 Identity:230/1054 - (21%)
Similarity:386/1054 - (36%) Gaps:271/1054 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1479 LDYETRRRYELRLA----------ASDNLKENYTTVIIHVKDVNDNPPVFERPTYRTQITE---- 1529
            :|:.:.||..|.||          .|..:.|..:...|.|:|.|......:..:.|.|..|    
  Rat     1 MDWHSFRRAALLLAFLFKVNRCGCFSQVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKF 65

  Fly  1530 -----EDDRNLPKRVLQVTATDGDKDRPQNIVYFLTGQGIDPDNPANSKFDINRTTGEIFVLKPL 1589
                 |.:.|..:..:....:|...::|  :.|.::|.||  |.|....|.||:.||||.:...:
  Rat    66 AAACREGEDNSKRNPIAKIHSDCAANQP--VTYRISGVGI--DQPPYGIFIINQKTGEINITSIV 126

  Fly  1590 DRDQPNGRPQWRFTVFAQDEGGEGLVGYADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVM 1654
            ||:.   .|.:.....|.:..|:.|....:::|.:.|||||.|:|....:.|.:.||..|..:||
  Rat   127 DREV---TPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVM 188

  Fly  1655 TMTAVDYDDPNEGSNARLVYSIEKNVIEEETGSPIFEIEPDTGVIKTAVCCLDRERTPDYSIQVV 1719
            .:.|.|.|:|| ..|:.:.:.|   |.:|.:.:|:|.|...||.|:|....||||:...||:.|.
  Rat   189 KLNATDADEPN-NLNSLIAFKI---VRQEPSEAPMFIINRKTGEIRTMNNFLDREQYSQYSLVVR 249

  Fly  1720 A--MDGG--GLKGTGTASIRVKDINDMPPQFTKDEWFTEVDETDGTALPEMPILTVTVHDEDETN 1780
            .  .|||  |:......||.:.|:||..|...:..:..:::|.             .:|    :|
  Rat   250 GSDRDGGADGMSAECECSISILDVNDNIPYLDQSSYDIKIEEN-------------ALH----SN 297

  Fly  1781 KFQYKVIDNSGYGADKFT----MVRNNDG------------TGSLKIVQPLDYE--DQLQSNGFR 1827
            ..|::|||.....:|.:.    .|..|:|            .|:||:|:|||||  .:||     
  Rat   298 LQQFRVIDLDEEYSDNWKAVIFFVTGNEGNWFEIEMNERTNVGTLKVVKPLDYEAMQKLQ----- 357

  Fly  1828 FRIQVNDKGEDNDN--DKYHVAYSWVVVKLRDINDNKPHFERANVEVSVFE-------------- 1876
            ..|.|.:..|.:.:  .:|.:..:.:.||:.::           ||.|||.              
  Rat   358 LSIGVRNVAEFHQSILSQYTLTVTMITVKVLNV-----------VEGSVFRPGSKTFVVHSRMDA 411

  Fly  1877 DTKVGTELEKFKATDPDQGGKS-KVSYSIDRSSDRQRQFAINQNGSVTIQRSLDRE----VVPRH 1936
            :.:||    :|.|||.|.|..| .|.|.:..:.: ......::.|.:|::..:..|    :..|:
  Rat   412 NYRVG----EFTATDLDTGMTSTNVRYVMGNNPE-GLLVVDSKTGIITLRNRVTMEQYQRLNGRY 471

  Fly  1937 QVKILAIDDGSPPKTATATLTVIVQDI---------------NDNAPKFLKDYRPVLPEHVPPRK 1986
            :..:|:||| |..:|.|.|:.:.:...               .|........|:....|.  |::
  Rat   472 EGTMLSIDD-SLQRTCTGTIIIELDGTGWETGGGGGGGGGGGGDGGGGVTNGYKDTSTEE--PQR 533

  Fly  1987 VVEILATDDDDRSKSNGPPFQFRLDPSADDIIRASFKVEQ---------DQKGANGDGMAVISSL 2042
            ..  |..|.|:............|.|:...::...|.|..         |..||.|.|       
  Rat   534 TT--LTRDIDNTDTYQADEDNVHLGPAGIGLLIMGFLVLGLVPFLLICCDCGGAPGGG------- 589

  Fly  2043 RSFDREQQKEYMIPI-----------VIKDHGSPAMTGTSTLTVIIGDVNDNKMQPGSKDIF-VY 2095
            ..|:         |:           .::........|.:|:.|       .:|.||:.:|. ..
  Rat   590 AGFE---------PVPECSDGAIHTWAVEGPQPEPHDGITTICV-------PQMPPGNANIIECI 638

  Fly  2096 NYQGQSPDTPIGRVYVYDLDDWDLPDKKFYWEAMEHPRFK-----LDEDSGMVTMRAGT----RE 2151
            :..|...:...||    ::.|....::...:|.::..:..     ..|.||  |:|..:    |:
  Rat   639 DNSGVYTNEYCGR----EMQDLGGGERTTGFELVDGVKTSAAPEICQEYSG--TLRRNSMRECRD 697

  Fly  2152 GRYHLRF-------KVYDRKHTQTDIPANVTVTVREIPHEAVVNSGSVRLSGISDEDFIRVWNYR 2209
            |..::.|       |.|.........|:|..:.:.:| ..|...:|||.......||        
  Rat   698 GGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDI-EGAGSPTGSVGCCSFIGED-------- 753

  Fly  2210 TQSMSRSKMD----RFRDKLADL-LNTERENVDIF-------------------SVQLKRKHPPL 2250
               :..|.:|    :|: ||||: |..|   :|.:                   :..|...|||:
  Rat   754 ---LDESFLDTLGPKFK-KLADISLGKE---IDSYPDPDPSWPPQSTEPICPQRTEPLASGHPPI 811

  Fly  2251 TDVRFSAHGSPYYKPVRL-------NGIVLMHREEIEKDVGINITMVGIDECLYENQMCEGSCTN 2308
                     ||::....:       :|..:.|..:|...:|            |.|.....|.|.
  Rat   812 ---------SPHFGTTTVISENTYPSGPGIQHPMQIPDPLG------------YGNVTVRESYTT 855

  Fly  2309 SLEISPLPYMVNANKTALVGVRVDTIADCTCGARNFTKPESCRTTPCHNGGRCVDTR--FGPHCS 2371
            |..:.|..:. :.|:.|...|..:.:.....||......|   .....:|...:.|.  ..|..|
  Rat   856 SGTLKPSVHF-HDNRQASNVVVTERVVGPISGADLHGMLE---IPDLRDGSNVIVTERVIAPGSS 916

  Fly  2372 CPVGYTGPRCQQTT 2385
            .|...|.|...:|:
  Rat   917 LPTSLTIPNPLETS 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637 12/44 (27%)
Cadherin_repeat 1522..1630 CDD:206637 30/116 (26%)
Cadherin_repeat 1638..1741 CDD:206637 36/106 (34%)
Cadherin_repeat 1762..1861 CDD:206637 27/118 (23%)
Cadherin_repeat 1871..1966 CDD:206637 27/128 (21%)
Cadherin_repeat 1974..2083 CDD:206637 20/128 (16%)
EGF 2350..2380 CDD:278437 6/31 (19%)
LamG 2385..2570 CDD:238058 0/1 (0%)
EGF_2 <2605..2631 CDD:285248
Laminin_G_2 2665..2800 CDD:280389
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
Dsg1XP_038953306.1 CA 84..166 CDD:214520 27/88 (31%)
Cadherin_repeat 176..276 CDD:206637 36/103 (35%)
Cadherin 285..388 CDD:394985 28/124 (23%)
Cadherin_repeat 412..494 CDD:206637 23/87 (26%)
Cadherin_C 657..772 CDD:395833 26/129 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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