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Protein Alignment CadN and Cdh9

DIOPT Version :9

Sequence 1:	NP_001027277.1	Gene:	CadN / 35070	FlyBaseID:	FBgn0015609	Length:	3101	Species:	Drosophila melanogaster
Sequence 2:	NP_001162101.1	Gene:	Cdh9 / 29163	RGDID:	1308343	Length:	788	Species:	Rattus norvegicus

Alignment Length:	642	Identity:	167/642 - (26%)
Similarity:	291/642 - (45%)	Gaps:	132/642 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly  1513 DNPPVFERPTYRTQITEEDDRNLPKRVLQVTATDG------------------------------ 1547
            ||.|          :..:|:.:|.||::.:...||
  Rat    20 DNSP----------LQGKDNIHLRKRIVNLKKDDGKMLHRTKRGWMWNQFFLLEEYTGTDTQYVG 74

  Fly  1548 ----DKDRPQ-NIVYFLTGQGIDPDNPANSKFDINRTTGEIFVLKPLDR-------------DQP 1594
                |:|:.. |:.|.|||.|      |.:.|.|:..||:|...|.|||             |:.
  Rat    75 KLHTDQDKGDGNLKYILTGDG------AGNLFVIDENTGDIHAAKKLDREEKSLYILRAKAIDRK 133

  Fly  1595 NGR---PQWRFTVFAQDEGGEGLVGYADVQVNLKDINDNAPIFPQGVYFGNVTENGTAGMVVMTM 1656
            .||   |:..|.                  :.:.|||||.|.|.:.:|..:|.|....|..|:.:
  Rat   134 TGRQVEPESEFI------------------IKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQV 180

  Fly  1657 TAVDYDDPNEGSNARLVYSIEKNVIEEETGSPIFEIEPDTGVIKTAVCCLDRERTPDYSIQVVAM 1721
            ||.|.||.|.|::|::||||.:       |.|.|.::|::|:||||:..:.||....|.:.:.|.
  Rat   181 TATDADDANYGNSAKVVYSILQ-------GQPYFSVDPESGIIKTALPDMSRENREQYQVVIQAK 238

  Fly  1722 D----GGGLKGTGTASIRVKDINDMPPQFTKDEW-FTEVDETD-GTALPEMPILTVTVHDED--E 1778
            |    .|||.||.|.:|.:.|:|:.||:|.:..: |..::... ||.|..     :..:|.|  |
  Rat   239 DMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSLESAPLGTHLGR-----IKANDPDTGE 298

  Fly  1779 TNKFQYKVIDNSGYGADKFTMVRNND-GTGSLKIVQPLDYEDQLQSNGFRFRIQVNDKGEDNDND 1842
            ..:.:|.:  :.|.|:|.|.::.:.| ..|.:.:.|.||:|.::     .:.::|:......|..
  Rat   299 NAELEYSI--SEGEGSDMFDVITDKDTQEGIITVKQNLDFEKKM-----LYTLRVDASNTHPDPR 356

  Fly  1843 KYHVA----YSWVVVKLRDINDNKPHFERANVEVSVFEDTKVGTELEKFKATDPDQGGKSKVSYS 1903
            ..|:.    .:.|.:.:.|: |..|.|.:.:..:.|.||.|.|:.:.:..|.||| ...:.:.||
  Rat   357 FLHLGPFKDSAMVKISVEDV-DEPPVFSKLSYLMEVDEDVKEGSIIGQVTAYDPD-AMNNIIKYS 419

  Fly  1904 IDRSSDRQRQFAI-NQNGSVTIQRSLDREVVPRHQVKILAIDDGSPPKTATATLTVIVQDINDNA 1967
            :||.:|..|.|:| ::|||:...:.||||..|.|.:.:.|.:..:|.:::...:.:.:.||||:|
  Rat   420 VDRHTDMDRVFSIHSENGSIFTLKPLDRESSPWHNITVTATEINNPKQSSQIAVFIRILDINDHA 484

  Fly  1968 PKFLKDYRPVLPEHVPPRKVVEILATDDDDRSKSNGPP--FQFRLDPSADDIIRASFKVEQDQKG 2030
            |:|...|...:.|:....::::.::..|.|     .||  .:|..:|..:..:..:|.:..::..
  Rat   485 PEFAMYYETFVCENAKSGQLIQTISVMDKD-----DPPRGHKFFFEPVPEFPLNPNFTIVDNKDN 544

  Fly  2031 ANGDGMAVISSLRSFDREQQKEYMIPIVIKDHGSPAMTGTSTLTV-IIGDVNDNKMQ 2086
            ..|    :|:....:.|.:...|::|::|.|:..|..:.|.|||: :....|...||
  Rat   545 TAG----IITRKDGYSRNKMNTYLLPVLIFDNDYPIQSSTGTLTIRVCACDNQGNMQ 597

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.