DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and Slit1

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_056563.2 Gene:Slit1 / 20562 MGIID:1315203 Length:1531 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637
Cadherin_repeat 1638..1741 CDD:206637
Cadherin_repeat 1762..1861 CDD:206637
Cadherin_repeat 1871..1966 CDD:206637
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:278437
LamG 2385..2570 CDD:238058
EGF_2 <2605..2631 CDD:285248
Laminin_G_2 2665..2800 CDD:280389
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
Slit1NP_056563.2 LRRNT 33..64 CDD:214470
leucine-rich repeat 43..62 CDD:275380
LRR <62..>219 CDD:227223
LRR 1 62..83
leucine-rich repeat 63..86 CDD:275380
LRR 2 86..107
leucine-rich repeat 87..110 CDD:275380
LRR 3 110..131
leucine-rich repeat 111..134 CDD:275380
LRR 4 134..155
leucine-rich repeat 135..158 CDD:275380
LRR 5 158..179
LRR_8 159..217 CDD:338972
leucine-rich repeat 159..182 CDD:275380
LRR 6 182..203
leucine-rich repeat 183..206 CDD:275380
PCC 188..>328 CDD:188093
leucine-rich repeat 207..334 CDD:275380
LRR 7 310..331
internalin_A 311..>682 CDD:380193
LRR 8 334..355
leucine-rich repeat 335..358 CDD:275380
LRR 9 358..379
leucine-rich repeat 359..379 CDD:275380
LRR 10 382..403
leucine-rich repeat 383..406 CDD:275380
LRR 11 406..427
leucine-rich repeat 407..428 CDD:275380
leucine-rich repeat 431..528 CDD:275380
leucine-rich repeat 529..566 CDD:275380
LRR 12 541..562
LRR 13 566..587
leucine-rich repeat 567..590 CDD:275380
LRR 14 590..611
leucine-rich repeat 591..614 CDD:275380
LRR 15 614..635
leucine-rich repeat 615..638 CDD:275380
LRR 16 638..659
leucine-rich repeat 639..660 CDD:275380
PCC 644..>730 CDD:188093
leucine-rich repeat 663..754 CDD:275380
LRRNT 733..765 CDD:214470
leucine-rich repeat 755..785 CDD:275380
LRR_8 762..820 CDD:338972
LRR 17 762..783
LRR 18 785..806
leucine-rich repeat 786..809 CDD:275380
LRR 19 809..830
leucine-rich repeat 810..830 CDD:275380
LRR 20 833..854
leucine-rich repeat 834..857 CDD:275380
PCC 842..>1002 CDD:188093
EGF_CA 1005..1041 CDD:238011
EGF_CA 1044..1080 CDD:238011
EGF_CA 1085..1119 CDD:238011
LamG 1186..1319 CDD:214598
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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