DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN and cdh2

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_001120890.1 Gene:cdh2 / 100151712 XenbaseID:XB-GENE-951659 Length:906 Species:Xenopus tropicalis


Alignment Length:1748 Identity:312/1748 - (17%)
Similarity:457/1748 - (26%) Gaps:961/1748 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly  1418 FDKSLYEAEVDENEDIQHTVLTVTAKDHDESSRIRYEI---TSGNIGGAFAVKNMTGAIYVAGAL 1479
            |.:.:|.|.|..:......:|.|...|.....||:||.   |...|.|       .|.::.:...
 Frog    39 FLEDVYHASVYRSVHEGQPLLNVMFTDCGADRRIQYETSNPTDFRIDG-------DGVVFASRTF 96

  Fly  1480 DYETRRRYELRLAASDNLKEN-YTTVII-----HVKDVNDN------------------------ 1514
            |....:...:..|..::.:|. :.||.|     ||:|::..                        
 Frog    97 DISPEQAEFIVYAQDEDTRELWHVTVKITLRPPHVQDLHQGFHKVREIKFSTQRKHNGLQRQKRD 161

  Fly  1515 ---PPVFERPTYRTQITEEDDRNLPKRVLQVTATDGDKDRPQNIVYFLTGQGIDPDNPANSKFDI 1576
               ||:        .:.|......|:.::::.:   |:|:..::.|.:||.|  .|.|....:.|
 Frog   162 WVIPPI--------NVPENARGTFPQELVRIRS---DRDKSLSLRYSVTGPG--ADQPPIGVYII 213

  Fly  1577 NRTTGEIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADVQVNLKDINDNAPIFPQGVYFG 1641
            |..:|::.|.|||||:|   ...:.....|.|..|..:....|:.:|:.|:|||.|.|...::.|
 Frog   214 NPISGQLSVTKPLDREQ---IATFHLRAHAVDVNGNQVENPIDIVINVIDMNDNRPEFLHQIWNG 275

  Fly  1642 NVTENGTAGMVVMTMTAVDYDDPNEGSNARLVYSIEKNVIEEETGSP-IFEIEPDTGVIKTAVCC 1705
            .:.|....|..|||:||:|.|||.: .|..|.|.|....  ..:.|| :|.|..:||.|.|....
 Frog   276 TIPEGSKPGTYVMTVTAIDGDDPKQ-PNGMLRYKILSQT--PASSSPNMFTINNETGDIITLAAG 337

  Fly  1706 LDRERTPDYS--IQVVAMDGG---GLKGTGTASIRVKDINDMPPQFTKDEWFTEVDETDGTALPE 1765
            ||||:...|:  ||...|:|.   ||..|.||.|.|.|:||.||:||...::.||.|.    ..:
 Frog   338 LDREKVQRYTLIIQATDMEGNPTYGLSNTATAVIAVTDVNDNPPEFTAMTFYGEVPEN----RVD 398

  Fly  1766 MPILTVTVHDEDETN----KFQYKVIDNSGYGADKF---TMVRNNDGTGSLKIVQPLDYEDQ--- 1820
            :.:..:||.|:|:.:    ...|::|  ||.|..:|   |...:|||.  :.:|:|:|||.:   
 Frog   399 VVVANLTVTDKDQPHTPAWNAVYRII--SGDGTGRFAIRTDANSNDGL--VTVVKPIDYETKSTY 459

  Fly  1821 ----LQSNGFRFRIQVNDKGEDNDNDKYHVAYSWVVVKLRDINDNKPHFERANVEVSVFEDTKVG 1881
                :..|.......:..|.|..         :.|.|.:.|:|:| |:|......:...|....|
 Frog   460 ILTVIAENQVDLIKGIQYKPEST---------ATVSVTIIDVNEN-PYFAPNPKLIRQEEGYFAG 514

  Fly  1882 TELEKFKATDPDQGGKSKVSYSIDRSSDRQRQFAINQ-NGSVTIQRSLDREVV----PRHQVKIL 1941
            ..|..|.|.|||:..:..:.||  :.||......|:. ||.:|....||||.:    ..:....|
 Frog   515 KLLTTFSAQDPDRYMQQTIRYS--KLSDPANWLKIDPVNGFITTTAVLDRESMYVKNNMYNATFL 577

  Fly  1942 AIDDGSPPKTATATLTVIVQDINDNAPKFLKDYRPVLPEHVPPRKVVEILATDDDDRSKSNGPPF 2006
            |.|.|.||.:.|.||.:.:.|||||||            :|.|.: |||..              
 Frog   578 ATDSGIPPMSGTGTLQIYLLDINDNAP------------YVYPHE-VEICE-------------- 615

  Fly  2007 QFRLDPSADDIIRASFKVEQDQKGANGDGMAVISSLRSFDREQQKEYMIPIVIKDHGSPAMTGTS 2071
              |.||:|.:|                                                      
 Frog   616 --RPDPNAINI------------------------------------------------------ 624

  Fly  2072 TLTVIIGDVNDNKMQPGSKDIFVYNYQGQSPDTPIGRVYVYDLDDWDLPDKKFYWEAMEHPRFKL 2136
              |.:..|:|.|                                                     
 Frog   625 --TALDADINPN----------------------------------------------------- 634

  Fly  2137 DEDSGMVTMRAGTREGRYHLRFKVYDRKHTQTDIPANVTVTVREIPHEAVVNSGSVRLSGISDED 2201
                      ||.         .:::..::..||..|.|||               ||||     
 Frog   635 ----------AGP---------FIFELPYSPMDIKKNWTVT---------------RLSG----- 660

  Fly  2202 FIRVWNYRTQSMSRSKMDRFRDKLADLLNTERENVDIFSVQLKRKHPPLTDVRFSAHGSPYYKPV 2266
                                                                             
 Frog   661 ----------------------------------------------------------------- 660

  Fly  2267 RLNGIVLMHREEIEKDVGINITMVGIDECLYENQMCEGSCTNSLEISPLPYMVNANKTALVGVRV 2331
                                                                             
 Frog   661 ----------------------------------------------------------------- 660

  Fly  2332 DTIADCTCGARNFTKPESCRTTPCHNGGRCVDTRFGPHCSCPVGYTGPRCQQTTRSFRGNGWAWY 2396
                                                                             
 Frog   661 ----------------------------------------------------------------- 660

  Fly  2397 PPLEMCDESHLSLEFITRKPDGLIIYNGPIVPPERDETLISDFIALELERGYPRLLIDFGSGTLE 2461
                  |.:.|||:                                                   
 Frog   661 ------DHAQLSLK--------------------------------------------------- 668

  Fly  2462 LRVKTKKTLDDGEWHRIDLFWDTESIRMVVDFCKSAEIAEMEDGTPPEFDDMSCQARGQIPPFNE 2526
                                                                             
 Frog   669 ----------------------------------------------------------------- 668

  Fly  2527 YLNVNAPLQVGGLYREQFDQSLYFWHYMPTAKGFDGCIRNLVHNSKLYDLAHPGLSRNSVAGCPQ 2591
                                                                             
 Frog   669 ----------------------------------------------------------------- 668

  Fly  2592 TEEVCAQTETTARCWEHGNCVGSLSEARCHCRPGWTGPACNIPTIPTTFKAQSYVKYALSFEPDR 2656
                                :|||                                         
 Frog   669 --------------------IGSL----------------------------------------- 672

  Fly  2657 FSTQVQLRFRTREEYGELFRVSDQHNREYGILEIKDGHLHFRYNLNSLRTEEKDLWLNAIVVNDG 2721
                                       :|||           ||:....|               
 Frog   673 ---------------------------DYGI-----------YNIPIQIT--------------- 684

  Fly  2722 QWHVVKVNRYGSAATLELDGGEGRRYNETFEFVGHQWLLVDKQEGVYAGGKAEYTGVRTFEVYAD 2786
                              |.|.                                           
 Frog   685 ------------------DSGN------------------------------------------- 688

  Fly  2787 YQKSCLDDIRLEGKHLPLPPAMNGTQWGQATMARNLEKGCPSNKPCSNVICPDPFECVDLWNVYE 2851
                               |||:.|.:                                      
 Frog   689 -------------------PAMSNTSY-------------------------------------- 696

  Fly  2852 CTCGEGRIMSPDSKGCMDRNECLDMPCMNGATCINLEPRLRYR-CICPDGFWGENCELVQEGQTL 2915
                                                   ||.: |.|..|:......::..|   
 Frog   697 ---------------------------------------LRVKVCSCEHGYCSTTAPIIGTG--- 719

  Fly  2916 KLSMGALAAILVCLLIILILVLVFVVYNRR----REAHIKYPGPDDDVRENIINYDDEGGGEDDM 2976
             |..||:.|||:|::|:|.|||:|||:.:|    |:|......|:||||:||:.||:|||||:|.
 Frog   720 -LGTGAIIAILLCIIILLTLVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQ 783

  Fly  2977 TAFDITPLQIPIGGPMPPE-LAPM------KMPI----MYPVMTLMPGQEPNVGMFIEEHKKRAD 3030
            . :|::.||.|  ..|.|: :.|:      :.||    .||:.:..| ...::|.||.|..|.||
 Frog   784 D-YDLSQLQQP--DTMEPDTIKPVGIRRMDERPIHAEPQYPIRSAAP-HPGDIGDFINEGLKAAD 844

  Fly  3031 GDPNAPPFDDLRNYAYEGGGSTAGSLSSLASGTDDEQQEYDYLGAWGPRFDKLANMYG 3088
            .||.|||:|.|..:.|||.||||||||||.|.:...:|:||||..|||||.|||:|||
 Frog   845 NDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGGEQDYDYLNDWGPRFKKLADMYG 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637 23/99 (23%)
Cadherin_repeat 1522..1630 CDD:206637 27/107 (25%)
Cadherin_repeat 1638..1741 CDD:206637 41/108 (38%)
Cadherin_repeat 1762..1861 CDD:206637 26/112 (23%)
Cadherin_repeat 1871..1966 CDD:206637 32/99 (32%)
Cadherin_repeat 1974..2083 CDD:206637 13/108 (12%)
EGF 2350..2380 CDD:278437 0/29 (0%)
LamG 2385..2570 CDD:238058 4/184 (2%)
EGF_2 <2605..2631 CDD:285248 3/25 (12%)
Laminin_G_2 2665..2800 CDD:280389 8/134 (6%)
EGF_CA 2869..2907 CDD:238011 5/38 (13%)
Cadherin_C 2952..3088 CDD:279398 69/146 (47%)
cdh2NP_001120890.1 Cadherin_pro 34..126 CDD:370101 21/93 (23%)
CA_like 164..264 CDD:391937 29/115 (25%)
Cadherin_repeat 274..379 CDD:206637 42/107 (39%)
Cadherin_repeat 387..495 CDD:206637 29/124 (23%)
Cadherin_repeat 514..602 CDD:206637 31/89 (35%)
Cadherin 611..702 CDD:333779 45/907 (5%)
Cadherin_C 751..904 CDD:366437 73/156 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5175
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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