DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN and slit1

DIOPT Version :9

Sequence 1:NP_001027277.1 Gene:CadN / 35070 FlyBaseID:FBgn0015609 Length:3101 Species:Drosophila melanogaster
Sequence 2:NP_001090702.1 Gene:slit1 / 100036682 XenbaseID:XB-GENE-1007728 Length:1529 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadNNP_001027277.1 Cadherin_repeat 178..301 CDD:206637
Cadherin_repeat 337..396 CDD:206637
E_set 449..541 CDD:298831
Cadherin_repeat 549..>625 CDD:206637
Cadherin_repeat 655..752 CDD:206637
Cadherin_repeat 765..853 CDD:206637
Cadherin_repeat 862..964 CDD:206637
Cadherin_repeat 973..1074 CDD:206637
Cadherin_repeat 1083..1166 CDD:206637
Cadherin_repeat <1219..1298 CDD:206637
Cadherin_repeat 1310..1414 CDD:206637
Cadherin_repeat 1423..1514 CDD:206637
Cadherin_repeat 1522..1630 CDD:206637
Cadherin_repeat 1638..1741 CDD:206637
Cadherin_repeat 1762..1861 CDD:206637
Cadherin_repeat 1871..1966 CDD:206637
Cadherin_repeat 1974..2083 CDD:206637
EGF 2350..2380 CDD:278437
LamG 2385..2570 CDD:238058
EGF_2 <2605..2631 CDD:285248
Laminin_G_2 2665..2800 CDD:280389
EGF_CA 2869..2907 CDD:238011
Cadherin_C 2952..3088 CDD:279398
slit1NP_001090702.1 LRRNT 32..63 CDD:214470
leucine-rich repeat 42..61 CDD:275380
leucine-rich repeat 62..85 CDD:275380
LRR <70..>218 CDD:227223
leucine-rich repeat 86..109 CDD:275380
leucine-rich repeat 110..133 CDD:275380
leucine-rich repeat 134..157 CDD:275380
leucine-rich repeat 158..181 CDD:275380
leucine-rich repeat 182..205 CDD:275380
leucine-rich repeat 206..310 CDD:275380
TPKR_C2 214..263 CDD:387596
LRRNT 281..312 CDD:214470
internalin_A 310..>681 CDD:380193
leucine-rich repeat 312..333 CDD:275380
leucine-rich repeat 334..357 CDD:275380
leucine-rich repeat 358..378 CDD:275380
leucine-rich repeat 406..429 CDD:275380
leucine-rich repeat 522..540 CDD:275380
internalin_A 531..>865 CDD:380193
leucine-rich repeat 541..565 CDD:275380
leucine-rich repeat 566..589 CDD:275380
leucine-rich repeat 590..613 CDD:275380
leucine-rich repeat 614..637 CDD:275380
leucine-rich repeat 638..661 CDD:275380
leucine-rich repeat 662..784 CDD:275380
leucine-rich repeat 663..753 CDD:275380
LRR_8 785..843 CDD:338972
leucine-rich repeat 785..808 CDD:275380
leucine-rich repeat 809..832 CDD:275380
leucine-rich repeat 833..853 CDD:275380
PCC 841..>978 CDD:188093
EGF 967..999 CDD:333761
EGF_CA 1003..1039 CDD:238011
EGF_CA 1042..1078 CDD:238011
EGF_CA 1083..1117 CDD:238011
EGF 1126..1155 CDD:333761
LamG 1184..1317 CDD:214598
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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