DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and SYTC

DIOPT Version :10

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_974729.1 Gene:SYTC / 830301 AraportID:AT5G04220 Length:540 Species:Arabidopsis thaliana


Alignment Length:235 Identity:59/235 - (25%)
Similarity:108/235 - (45%) Gaps:39/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 PVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKNFWQTRIHKRTLNPVFDEQFVFEVTAG 294
            || |||:|.:|.|:||..:...||:|||.|:.|..:|....:|.|.||.|||.::|.|...|...
plant   259 PV-GLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDP 322

  Fly   295 VIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQLKLWTPLSSASAQDMKVDLGD------ 353
              :.:.:::.::|:|....|..:|...:.|..::..|:.:....|...|  ::.:|.||      
plant   323 --NSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNS--NVVMDSGDKKKRGR 383

  Fly   354 IMVSLAYLPSAERLM----------------------VVLIKARNLRIVDDARNSSDPYVKVTLL 396
            :.|.|.|:|..|..:                      ::.:..::.:.|:..:..|:||..|...
plant   384 LEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFR 448

  Fly   397 GPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCV 436
            |      :|:||.:.:.|.:|.:||...|.:.:..:|..:
plant   449 G------EKKKTKMLKKTRDPRWNEEFQFTLEEPPVKESI 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 35/110 (32%)
C2B_Synaptotagmin 352..488 CDD:175975 22/113 (19%)
SYTCNP_974729.1 DUF456 <7..>30 CDD:461257
SMP_SYT 62..248 CDD:439233
COG5038 67..>538 CDD:227371 59/235 (25%)
Blue background indicates that the domain is not in the aligned region.

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