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Protein Alignment Sytalpha and Doc2b

DIOPT Version :9

Sequence 1:	NP_001188832.1	Gene:	Sytalpha / 35068	FlyBaseID:	FBgn0261089	Length:	504	Species:	Drosophila melanogaster
Sequence 2:	NP_112404.1	Gene:	Doc2b / 81820	RGDID:	620519	Length:	412	Species:	Rattus norvegicus

Alignment Length:	385	Identity:	104/385 - (27%)
Similarity:	164/385 - (42%)	Gaps:	84/385 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly   113 DNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTLSYCSTTSVPIARSDKHVVLAM 177
            |..|.|  |..:..|||        ...||||.:|..|              |.|.:.
  Rat    35 DYFPRF--PRGLPPTAA--------PRASAPPDAPARS--------------PAATAG------- 68

  Fly   178 HPSRPRVSSMNAKLDHTKIDMTLYRSHSQ-------PKTINPVSLN---------------EVRG 220
                ||..|..|:.|...:|. |:.::..       |..:.|.:..               ...|
  Rat    69 ----PRSPSDGARDDDEDVDQ-LFGAYGASPGPSPGPSPVRPPAKPPEDEPDADGYESDDCTALG 128

  Fly   221 NLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLP--DKKNFWQTRIHKRTLNPVF 283
            .|..||.||.....|:..:.:|:.|:|...:|.||||.|:.|||  .|.|..:|:..:.||||.:
  Rat   129 TLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKTLRNTLNPSW 193

  Fly   284 DEQFVFEVTAGVID----KRTVEILLYDFDAYSRHVCIGGSKLHLANLD----------LSEQLK 334
            :|...:   .|:.|    ::|:.|.:.|.|.:..:..||.:::.|..|.          |.:||
  Rat   194 NETLTY---YGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFSICLEKQL- 254

  Fly   335 LWTPLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSDPYVKVTLLGPG 399
               |:..|..:.:: :.|.|::||.|....:.|:|.:::..:|..: ||...|||||| |.|.|.
  Rat   255 ---PVDKAEDKSLE-ERGRILISLKYSSQKQGLLVGIVRCAHLAAM-DANGYSDPYVK-TYLKPD 313

  Fly   400 GKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGSSEILGRTLIG 459
            ..|..|.||.|::.||||.:||...:::....|....||.||....:..|::.:|..::|
  Rat   314 VDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKSNDFIGGVVLG 373

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.