DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and sytl1

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001122005.1 Gene:sytl1 / 777759 ZFINID:ZDB-GENE-060503-439 Length:539 Species:Danio rerio


Alignment Length:567 Identity:123/567 - (21%)
Similarity:218/567 - (38%) Gaps:144/567 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MDIVIREEDISLAQIGVYASVSFLVVSAV------GAALYTTCSKRYRLNWFE------------ 57
            :::::|:.::...:.|....:...|...|      ||..:...||||.....:            
Zfish    21 LNVLLRDAELRSREEGRVRKLQQTVSDPVHLRSLSGAWFHEERSKRYEKGGADVVHASLRRKRRG 85

  Fly    58 ------------QNLLESANEKDEDQQREALVAGAVGYNVDNVNEVPRGKY-SSGNAGNLSPTSL 109
                        .|......:::||:..|..:.|       |:||....|: ....:|.....||
Zfish    86 KDLPLTAIFDKGNNSSHVHEQQEEDRNAERDLQG-------NMNEREDDKHQEQKESGQEDGESL 143

  Fly   110 KSEDNDPAFWVPASVTSTAAIQQQV-----SNTTEES-------APPTSPT-----------GSL 151
            .|.    |..:|.|.|.....:.::     .::.|||       .|.||||           ||.
Zfish   144 ISN----AITIPQSRTRNVTKRNEILGSGFEDSVEESENKERRILPSTSPTLQIDSEGDIDSGST 204

  Fly   152 KSNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSLN 216
            :.|...:.|.||:    :..|:             ||..|      |:||       ::......
Zfish   205 EINYTRFGSVTSL----TSHHM-------------MNGSL------MSLY-------SVGDFGDV 239

  Fly   217 EVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPD-----KKNFWQTRIHK 276
            .|.|.:..||.||.....|.|.::..|:|...: ...:|||.||.||||     ||   :|.:.:
Zfish   240 VVSGRIQFSLQYDVRTEELYVHIIRCQDLASAR-KNRSDPYVKVYLLPDNTSRSKK---KTAVRR 300

  Fly   277 RTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQLKLWTPLSS 341
            :|||||:||...::|....:..|.:.:.::..:...|::.:|..::.|...|.|:....|..|..
Zfish   301 KTLNPVYDETMTYKVRRLDLPARVLSMSVWHMERMRRNLFLGELEVRLGQWDWSQNQPTWQNLQP 365

  Fly   342 --ASAQDMKVDLGDIMVSLAYLPSAE---------------RLMVVLIKARNLRIVDDARNSSDP 389
              ..:.:..:..|.|:.|:.::|...               |.:|.|:..:        |.:.:.
Zfish   366 RVQLSPEAIISRGTILFSIKFVPPGSEGRGNPATGELHIWLREIVGLLPTK--------RGAPNT 422

  Fly   390 YVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFD--VAKETLKNCVLEFTVVH---DGLLGS 449
            |||..:| |....:..::|.|.||:::||:|..:.:|  .:.:.::.|. |.||.:   .|.||.
Zfish   423 YVKSVVL-PDESGVSGQQTRVVRGSVSPVFNHTMVYDGFQSSDLIQACA-EITVWNPHPSGCLGG 485

  Fly   450 SEILGRTLIGNSPEV----RTEEKI-FFEEVFRAKNATAQWVPLQEP 491
            ..:...:.:.....|    .||::| .:..|.::.|:   ||....|
Zfish   486 VRLSTGSGLSYGQSVCWMDSTEDEINVWSSVIQSPNS---WVDTSLP 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 38/127 (30%)
C2B_Synaptotagmin 352..488 CDD:175975 36/160 (23%)
sytl1NP_001122005.1 PHD_SF 12..>43 CDD:304600 2/21 (10%)
C2A_SLP-1_2 242..364 CDD:176039 36/125 (29%)
C2B_SLP_1-2-3-4 377..531 CDD:175987 37/166 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.