DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and Syt9

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_038944965.1 Gene:Syt9 / 60564 RGDID:621169 Length:566 Species:Rattus norvegicus


Alignment Length:496 Identity:156/496 - (31%)
Similarity:243/496 - (48%) Gaps:71/496 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IREEDISLAQIGVYASVSFLVVSAVGAALY-TTCSKRYRLNWF---EQNLLESANEKDEDQQREA 75
            :|:.|||:       |:..|||:|.|.||: .:....::|.|.   |:.|...:    :|..:|.
  Rat    45 LRDPDISV-------SLLTLVVTACGLALFGVSLFVSWKLCWVPWRERGLFSGS----KDNNQEP 98

  Fly    76 LVAGAVGYNVDNVNEVPRGKYSSGNAGNLSPTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEE 140
            |                          |.:.|....::|...|..|.:....:::  ::|:|:.:
  Rat    99 L--------------------------NYTDTETNEQENSEDFLDPPTPCPDSSM--KISHTSPD 135

  Fly   141 SAPPTSPTGSLKSNTLSYCS---------TTSVPIARSDKHVVLAMHPSRP--RVSSMNAKLDHT 194
            ....|.|.|.      ..|:         |...|.||.:. :...::.|.|  .:..:..:...|
  Rat   136 IPLSTQPGGQ------DNCAHAVRVQRQVTEPTPSARHNS-IRRQLNLSNPDFNIQQLQRQEQLT 193

  Fly   195 ---KIDMTLYRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADP 256
               :|...||:..|........|.::..|.|:..|.||.....|.|::.:|.||..:.||||:||
  Rat   194 GIGRIKPELYKQRSLDNDDGRRSNSKACGKLNFILKYDCDLEQLIVKIHKAVNLPAKDFSGTSDP 258

  Fly   257 YAKVRLLPDKKNFWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSK 321
            |.|:.||||:|...||::|::||||||||.|:|.|....::.|.:...:||||.:|||..||...
  Rat   259 YVKIYLLPDRKTKHQTKVHRKTLNPVFDEVFLFPVHYNDLEARKLHFSVYDFDRFSRHDLIGQVV 323

  Fly   322 L-HLANL-DLSEQLKLWTPLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDAR 384
            : |..:| |...:..||..:...:..:  ||||::|.||.|||:|.||.:.:||||||:.: |..
  Rat   324 VDHFFDLADFPRECILWKDIEYVTNDN--VDLGELMFSLCYLPTAGRLTITIIKARNLKAM-DIT 385

  Fly   385 NSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGS 449
            .:|||||||:|: ..|:::|||||..:|.|||||||||:.|||..|::....|...|:....:|.
  Rat   386 GASDPYVKVSLM-CDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPESIDQIHLSIAVMDYDRVGH 449

  Fly   450 SEILGRTLIGNSPEVRTEEKIFFEEVFRAKNATAQWVPLQE 490
            :|::|...:||..| |.....:.|.:...:...|.|..|.|
  Rat   450 NEVIGVCQVGNEAE-RLGRDHWSEMLSYPRKPIAHWHSLLE 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 52/124 (42%)
C2B_Synaptotagmin 352..488 CDD:175975 57/135 (42%)
Syt9XP_038944965.1 C2 221..345 CDD:417471 52/123 (42%)
C2B_Synaptotagmin-3-5-6-9-10 354..487 CDD:176048 57/135 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.780

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