DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and DH11.5

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001254131.1 Gene:DH11.5 / 3565199 WormBaseID:WBGene00008438 Length:825 Species:Caenorhabditis elegans


Alignment Length:485 Identity:86/485 - (17%)
Similarity:153/485 - (31%) Gaps:180/485 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NEKDEDQQREALVAGAVGYNVDNVNEVPRGKYSSG----------NAGN------LSPTSLKSED 113
            |.|..:|:|:.:....:....|.|:.:......:.          ||.:      ||.|.|..:|
 Worm   379 NRKFIEQRRQQVAMCHIDETCDVVSRISTTSRRTAQTEDLADFDDNASSIILDHFLSTTELNFDD 443

  Fly   114 NDPAFW-------------VPASVTSTAAIQQQVS--NTTEESAPPTSPTGSLKSNTLSYCSTTS 163
            :|.|.:             .|:|..:..::|..::  |..:|.           |..|.:|...|
 Worm   444 SDSADFSLNGACEDEFDEPAPSSSNTATSVQTDLTLLNVEQEI-----------SEYLEHCRDAS 497

  Fly   164 VPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSLNEVRGNLHVSLGY 228
            |.|.....:.: |.|....: |.||  :.|..:.:     |..|.:               ..|.
 Worm   498 VNITEEGMNFI-AKHFFEYQ-SFMN--IPHKAVHL-----HKVPAS---------------QAGT 538

  Fly   229 DPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKNFWQTRIHK--RTLNPVFDEQFVFEV 291
            ||..|.....:|:|...||.       |.|:.           .|:|:  |.....:..      
 Worm   539 DPSMGWAPKNMLKAGKHQPA-------PGARA-----------NRVHRDPRPNGTKYGR------ 579

  Fly   292 TAGVIDKR---------TVEILLYDFDAYSRHVCIGGSKLHLANLD----------------LSE 331
             ||..:.|         ..|.:....||:::         .|||.|                .:|
 Worm   580 -AGKHEHREWGDRHGELRDEKVACHKDAWTK---------FLANDDQGARTAFECDFEDRVLATE 634

  Fly   332 QLKLWTPLSSASAQDMKV---------------DLGDIMVSLAYLPSAERLMVVLIKARNLRIVD 381
            :..|...|...|.:.|.:               |:.:::..|.|.|:.:.:...:.||:.|..  
 Worm   635 EETLQEKLCRTSPEAMNLNALYAAANKAVSCGGDVCELLTILTYAPTVQFVTTTVKKAKALPY-- 697

  Fly   382 DARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVH--- 443
                ::.|:.::.|.  .|:::.::|    :.|:||                      ::||   
 Worm   698 ----NNAPFARIMLF--EGRRLMEQK----QTTVNP----------------------SLVHKSS 730

  Fly   444 -DGLLGSSEILGRTLIGNSPEVRTEEKIFF 472
             ||...||.....:...|..:|...|...|
 Worm   731 VDGSKPSSSSASTSSNDNPSDVSFSESFLF 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 26/149 (17%)
C2B_Synaptotagmin 352..488 CDD:175975 23/125 (18%)
DH11.5NP_001254131.1 C2B_Synaptotagmin 671..822 CDD:175975 23/124 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.