DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and Mctp1

DIOPT Version :10

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_038958080.1 Gene:Mctp1 / 309928 RGDID:1305199 Length:962 Species:Rattus norvegicus


Alignment Length:448 Identity:101/448 - (22%)
Similarity:176/448 - (39%) Gaps:106/448 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 VPRGKYSSGNAG--NLSPTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGSL-- 151
            :|..|.||..||  .::|...:|.|:.|:....:|::|:.....:.....:|.....||...|  
  Rat   125 LPVAKGSSTAAGTVGVTPPGGRSPDSAPSSSASSSLSSSPQPPPRGDRIRDEGTRRGSPEAHLCH 189

  Fly   152 -KSNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSL 215
             ||::|...:.....:..:......|..|:.|:......:||.:             :.||||..
  Rat   190 QKSSSLPGTACLEQLLEPAPPPAEPARRPAEPQSLQKGEELDCS-------------QKINPVET 241

  Fly   216 NEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKNFWQTRIHKRTLN 280
            :    |..|.|. ||....|::.|...|:|..|...||:|||.|.::  .:|..::::|..:.||
  Rat   242 S----NADVPLA-DPGMYQLDITLRRGQSLAARDRGGTSDPYVKFKI--GRKEVFRSKIIHKNLN 299

  Fly   281 PVFDEQFVFEVTAGVID--KRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQLKLWTPLSSAS 343
            ||::|:     ...:||  :..:.|.::|:|...:...:|.:.|.|..|:|:....:...|....
  Rat   300 PVWEEK-----ACVLIDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPH 359

  Fly   344 AQDMKVDLGDIMVSLAYLP------------------------------SAER------------ 366
            ..|.  |||.|::|:...|                              |.:|            
  Rat   360 YPDH--DLGIILLSVILTPKEGEPRDVQSSIHSFLHWRICDIKTMLMRKSWKRSSKFQTQSLRLS 422

  Fly   367 ------------LMVVLIKARNLRIVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVY 419
                        :.:.||:.|:|:.: |:...||||||..|   |.:|.|.:   :...||||.:
  Rat   423 DQHRKSHLWRGIVSITLIEGRDLKAM-DSNGLSDPYVKFRL---GHQKYKSK---IMPKTLNPQW 480

  Fly   420 NEALAFDVAKETLKNCVLEFTVVHDGLLGSSEILGRTLIGNSP---------EVRTEE 468
            .|...|.:.:|  :..|::.|..........:.:||..:..|.         |::.||
  Rat   481 REQFDFHLYEE--RGGVMDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLELQLEE 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 34/124 (27%)
C2B_Synaptotagmin 352..488 CDD:175975 36/180 (20%)
Mctp1XP_038958080.1 C2A_MCTP_PRT 255..376 CDD:176007 35/129 (27%)
C2B_MCTP_PRT 434..549 CDD:176022 30/112 (27%)
C2C_MCTP_PRT 589..707 CDD:176023
PRT_C <850..935 CDD:337028
Blue background indicates that the domain is not in the aligned region.

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