DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and Mctp2

DIOPT Version :10

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001178554.1 Gene:Mctp2 / 308742 RGDID:1562967 Length:872 Species:Rattus norvegicus


Alignment Length:422 Identity:97/422 - (22%)
Similarity:176/422 - (41%) Gaps:112/422 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 VPRGK-YSSGNAGNLS-PTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKS 153
            ||.|: ||...:..:| |.||.:     |..||.|.:|:....::....::|.|           
  Rat    62 VPEGRPYSGPQSSYISVPNSLST-----AGIVPKSSSSSLKQSEEELEWSQEEA----------- 110

  Fly   154 NTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQP-KTINPVSLNE 217
                    :.||...:|...:.| .|:....:...:.||       |:::..:| ||.....||.
  Rat   111 --------SHVPGVDTDSEEIYA-SPAEEWQAFSQSGLD-------LHKAPEEPEKTHGSDDLNA 159

  Fly   218 VRGNL----HVSLGY---------DPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKNF 269
            ...:.    .::||.         .|...||.:.|.|.:||..|...||:|||.|.:|  :.|..
  Rat   160 SMSSQQFEEQLTLGEASDCVSHLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKL--NGKTL 222

  Fly   270 WQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQ-- 332
            :::::..:.|||::||..|..:.:  :|:: :.:.:||.| .::...:|.:.:.|.:|:|:..  
  Rat   223 YKSKVIYKNLNPIWDEIVVLPIQS--LDQK-LRVKVYDRD-LTKSDFMGSAFVVLRDLELNRTTE 283

  Fly   333 --LKLWTPLSSASAQDMKVDLGDIMVSLAYLP----------------SAERLMVVLIKARNLRI 379
              |||..|.|      ::.|:|.|:::|..:.                ||.:..::    ||||:
  Rat   284 HILKLEDPNS------LEDDMGVIVLNLNLVVKQGDFKRQRWSNRKRLSASKSSLI----RNLRL 338

  Fly   380 VDDARNSS--DPYVKVTLLGPGGKKIK---------KRKTGVQR---GTL----NPVYNEALAFD 426
            .:..|.:.  :..:.:|||  .||.:.         :.|.|.||   .||    ||.:.|...|.
  Rat   339 SESLRKNQLWNGIISITLL--EGKNVSGGNMTEMFVQLKLGEQRYKSKTLCKSENPQWQEQFDFH 401

  Fly   427 VAKETLKNCVLEFTV------VHDGLLGSSEI 452
            ...:.:.  :|:..|      .|:..||:.::
  Rat   402 YFSDRMG--ILDIEVWGKDNKKHEERLGTCKV 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 36/139 (26%)
C2B_Synaptotagmin 352..488 CDD:175975 30/141 (21%)
Mctp2NP_001178554.1 C2A_MCTP_PRT 189..308 CDD:176007 38/130 (29%)
C2B_MCTP_PRT 351..463 CDD:176022 20/85 (24%)
C2C_MCTP_PRT 503..621 CDD:176023
PRT_C <765..>818 CDD:337028
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.