DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and Sytl4

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_038785.1 Gene:Sytl4 / 27359 MGIID:1351606 Length:673 Species:Mus musculus


Alignment Length:560 Identity:131/560 - (23%)
Similarity:214/560 - (38%) Gaps:166/560 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VVSAVGAALYTTCSKRYRL-----NWF---------------------------------EQNLL 61
            |:.:.|:.....|||...|     :||                                 .|:||
Mouse    93 VLESNGSWRCKVCSKEIELKKATGDWFYDQKVNRFDYRTGSEIIRMSLRQKPAVNKRETAGQSLL 157

  Fly    62 ESANEKD---------EDQQREALVAGAVGYNVDNVNEVPR---GK---------YSSGNAGNLS 105
            :.....|         |.||||..|          :.|||:   ||         ..|..|.:.|
Mouse   158 QQTQMGDIWPGRRIIQEQQQREQSV----------LFEVPKTRSGKSALEAESESLDSYTADSDS 212

  Fly   106 PTSLKSEDNDPAF--WVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTLSYCSTTSVPIAR 168
            .:...|.|....|  |...|     |.:.||    |:..||        .|..:.|......:.:
Mouse   213 TSRRDSLDKSGLFPEWKKMS-----APKSQV----EKEIPP--------GNQNAVCGDEGDMVFK 260

  Fly   169 SDKHVVLAMHPS---------RPRVSSMNAKL--DHTK------IDM--------------TLYR 202
            .:...||  .||         ||...:..:.:  |.:|      :||              .|:|
Mouse   261 KNTKKVL--RPSEYTKSVIDLRPEDVAQESGILGDRSKSVPGLSVDMEEEEEEEEDIDHLVKLHR 323

  Fly   203 ---------SHSQPKTINPV-SLN---------EVRGNLHVSLGYDPVGGLLNVRLLEAQNL-QP 247
                     |.|...|:..: |:.         .|.|.:..||.::.....|.:.:.|...| ..
Mouse   324 QKLARGSMQSGSSMSTLGSIMSIYSEAGDFGNISVTGKIAFSLKFEQKTQTLVIHVKECHQLAYA 388

  Fly   248 RQFSGTADPYAKVRLLPDK--KNFWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDA 310
            .:....::||.|..|||||  :...:|.|.:.|:||::||.|.:|::..::.:||::..::....
Mouse   389 DEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGR 453

  Fly   311 YSRHVCIGGSKLHLANLDLSEQLKLWTPL----SSASAQDMKVDLGDIMVSLAYLPSAE------ 365
            :.|:..:|.:::|:.:..|.::|....||    |:.|:..:....|:::|||.|:|:::      
Mouse   454 FGRNTFLGEAEVHMDSWKLDKKLDHCLPLHGKISTESSPGLPAHKGELVVSLKYIPASKLPVGGD 518

  Fly   366 ----------RLMVVLIKARNLRIVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYN 420
                      .|.|.:.:|:||...... .:||.:||..|| |...|..||||.|.:.||:|.||
Mouse   519 RKKSKGGEGGELQVWIKEAKNLTAAKSG-GTSDSFVKGYLL-PMRNKASKRKTPVMKKTLSPHYN 581

  Fly   421 EALAFD-VAKETLKNCVLEFTVVHDGLLGSSEILGRTLIG 459
            ....:: |..|.|::..||.||.....|.|::.||...:|
Mouse   582 HTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLG 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 33/129 (26%)
C2B_Synaptotagmin 352..488 CDD:175975 41/125 (33%)
Sytl4NP_038785.1 PHD_SF 8..121 CDD:389947 8/27 (30%)
FYVE_Slp4 58..107 CDD:277303 3/13 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..253 21/85 (25%)
C2A_SLP-4_5 359..483 CDD:175995 31/123 (25%)
C2B_SLP_1-2-3-4 498..663 CDD:175987 41/126 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.