DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and Syt3

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001107588.1 Gene:Syt3 / 20981 MGIID:99665 Length:587 Species:Mus musculus


Alignment Length:558 Identity:160/558 - (28%)
Similarity:260/558 - (46%) Gaps:99/558 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EEDISLAQIGVYASVSFLVVSAVGAALYTTCSKRYRLNWFEQNLLESANEKDEDQQREAL----- 76
            :.|||::.:.|.  |:|..:..:|.:|:.:    ::|.|...          .|:...|:     
Mouse    49 DADISVSLLSVI--VTFCGIVLLGVSLFVS----WKLCWVPW----------RDKGGSAVGGGPL 97

  Fly    77 ---------VAGAVGYNVDNV------NEVPRGKYSSGNAGN-------LSPTSL-KSEDNDPAF 118
                     :||.||....::      :.:..|.:..|:..:       |.|..| .||..:|::
Mouse    98 RKDLAPGVGLAGLVGGGGHHLGASLGGHPLLGGPHHHGHTAHHPPFAELLEPGGLGGSEPPEPSY 162

  Fly   119 -----WVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTLSYCSTTSVPIARSDKHVV---- 174
                 :..|:|.|..|...:.|.|:.| .|....|||  ...|...|...:|.|:|.:.|.    
Mouse   163 LDMDSYPEAAVASVVAAGVKPSQTSPE-LPSEGGTGS--GLLLLPPSGGGLPSAQSHQQVTSLAP 224

  Fly   175 LAMHPSRPR---VSSMNAKLDHT------KIDMTLYRSHSQPKTINPVSLNEVR----------- 219
            ...:|:.||   ..::..:.|.:      .:.:.|.....:.|.|..:.....:           
Mouse   225 TTRYPALPRPLTQQTLTTQADPSTEERPPALPLPLPGGEEKAKLIGQIKPELYQGTGPGGRRGGG 289

  Fly   220 --------GNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKNFWQTRIHK 276
                    |.:..:|.|......|.||:|:|.:|..:..:|.:|||.|:.||||:|..:||::|:
Mouse   290 SGEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR 354

  Fly   277 RTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLAN-LDLSEQ---LKLWT 337
            :||||:|:|.|.|.|....:.:|.:...:||||.:|||..||  ::.|.| |:|:||   ..||.
Mouse   355 KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIG--QVVLDNLLELAEQPPDRPLWR 417

  Fly   338 PLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSDPYVKVTLLGPGGKK 402
            .:....::  |.|||::..||.|||:|.||.|.:|||.||:.: |....||||||.:|:.. |::
Mouse   418 DILEGGSE--KADLGELNFSLCYLPTAGRLTVTIIKASNLKAM-DLTGFSDPYVKASLISE-GRR 478

  Fly   403 IKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGSSEILGRTLIGNSPEVRTE 467
            :|||||.:::.||||.|||||.||||.|:::|..|...||....:|.:|::|...:|  ||....
Mouse   479 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG--PEAADP 541

  Fly   468 --EKIFFEEVFRAKNATAQWVPLQEPANNLATSAKSSK 503
              .:.:.|.:...:.....|..|.| ...|::..|..|
Mouse   542 HGREHWAEMLANPRKPVEHWHQLVE-EKTLSSFTKGGK 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 49/145 (34%)
C2B_Synaptotagmin 352..488 CDD:175975 55/137 (40%)
Syt3NP_001107588.1 Cysteine motif. /evidence=ECO:0000269|PubMed:10531343 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..258 17/77 (22%)
C2A_Synaptotagmin-1-5-6-9-10 297..421 CDD:176031 49/125 (39%)
C2B_Synaptotagmin-3-5-6-9-10 430..564 CDD:176048 55/137 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.780

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