DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and Rph3a

DIOPT Version :10

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_011246487.1 Gene:Rph3a / 19894 MGIID:102788 Length:684 Species:Mus musculus


Alignment Length:427 Identity:105/427 - (24%)
Similarity:178/427 - (41%) Gaps:78/427 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 PRGKYSSGNAGNLSPTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTL 156
            |.|..::...|.....|.::..:||.:  |.:          |:...||.   |.|.|..::   
Mouse   299 PGGSRATPGPGRFPEQSTEAPPSDPGY--PGA----------VAPAREER---TGPAGGFQA--- 345

  Fly   157 SYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSLNEVR-- 219
                               |.|.:.|...:..|:....        :..:.:..|....:|..  
Mouse   346 -------------------APHTAAPYSQAAPARQPPP--------AEEEEEEANSYDSDEATTL 383

  Fly   220 GNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLP--DKKNFWQTRIHKRTLNPV 282
            |.|..||.||.....|...::.|:.|:|...:|.||||.|:.|||  .|.|..:|:..:.|.|||
Mouse   384 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 448

  Fly   283 FDEQFVFE-VTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQ------LKLWTPLS 340
            ::|...:. :|...:.::|:.|.:.|.|.:..:..||.::..|..|..:::      |:...|:.
Mouse   449 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMK 513

  Fly   341 SA----SAQDMKV-------------DLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSD 388
            .|    ||:.|.:             :.|.|:|||.|......|:|.:|:..:|..: ||...||
Mouse   514 RAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAM-DANGYSD 577

  Fly   389 PYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGSSEIL 453
            |:||:.|....||| .|.||.:::.||||.:||...:|:....|....|:.:|....:..|::.:
Mouse   578 PFVKLWLKPDMGKK-AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYI 641

  Fly   454 GRTLIGNSPEVRTEEKIFFEEVFRAKNATAQ-WVPLQ 489
            |...:|.|  .:.|....:.|..:.|:...: |..||
Mouse   642 GGCQLGIS--AKGERLKHWYECLKNKDKKIERWHQLQ 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 38/133 (29%)
C2B_Synaptotagmin 352..488 CDD:175975 42/136 (31%)
Rph3aXP_011246487.1 FYVE_RP3A 88..168 CDD:277301
PRK07764 <175..352 CDD:236090 15/89 (17%)
C2A_Rabphilin_Doc2 383..506 CDD:176000 36/122 (30%)
C2B_Rabphilin_Doc2 543..675 CDD:176030 41/135 (30%)
Blue background indicates that the domain is not in the aligned region.

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