DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and sue-1

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_492083.2 Gene:sue-1 / 184108 WormBaseID:WBGene00006306 Length:537 Species:Caenorhabditis elegans


Alignment Length:477 Identity:112/477 - (23%)
Similarity:170/477 - (35%) Gaps:146/477 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 GNAG-NLSPTSLKSE--DNDPAFWVPASVTSTAAIQQQVSNTTEES------------------- 141
            ||:. :|||.||..:  .::|.|:....|..:..:::..:...||.                   
 Worm    89 GNSQCSLSPVSLTPDPTPDEPEFYEEEDVDESEVVEEDYAQEEEEEGDDGEVVEYEDPVVVTPPE 153

  Fly   142 -----------APPTSP---------TGSLKSNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSS 186
                       |||..|         :.|::..|....|.|..|||          |...|.:.|
 Worm   154 EIRRISPEILIAPPPQPRRMSKFSVHSPSIEQITSKSSSDTEDPIA----------HGLDPSLYS 208

  Fly   187 MNAKL----DHTKIDMTLYRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQP 247
            .||.:    ::|.|..|...|.|.|....|..|    |.||.||.|..|...|.|.:.:.:.|  
 Worm   209 PNAPIIIENNNTAIHKTSVASSSSPTPQQPRGL----GLLHCSLLYFAVRKRLRVTVTKIEAL-- 267

  Fly   248 RQFSGTADPYAKVRLL-----PD-KKNFWQTRIHKRTLNPVFDEQFVFE-VTAGVIDKRTVEILL 305
               :|...|..::..|     |. |....||...||..:|:|:.:|.|: ||...:|.:.|.|..
 Worm   268 ---AGELKPEMEIHALCKVSIPGLKGGKEQTSETKRGRDPLFNHEFFFDNVTHEELDTKVVIITA 329

  Fly   306 YDFDA--YSRHVCIGGSKLHLAN---------LDLSEQLKLWTPLSSASAQDMKVDLGDIMVSLA 359
            .....  ..:.:.||.:.:.|.:         :...|::|...|..          ||.|..|..
 Worm   330 CHAGGGIKGKEIVIGEASVPLRDIREMNTKKEIKFIEEIKGLVPKK----------LGKIYTSSI 384

  Fly   360 YLPSAERLMVVLIKARNLRIVD-----DARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVY 419
            ....::||.:      ||:.||     ....:.|..||:||  ..|.|.:.:.:.|.:.|.:.||
 Worm   385 IEKDSKRLTI------NLKKVDALPKCGLIGAPDVCVKITL--TQGAKTQTKSSRVIKNTCSAVY 441

  Fly   420 NEALAFDVAKETLKNCVLEFTV---VHD------------------GLLGSSEI---------LG 454
            |||:.|...  |.||.:.:.::   |||                  |.:..|||         ||
 Worm   442 NEAVMFLCG--TSKNDLAQTSIVISVHDAQRTCTGDDTIGCAYLGIGAVDKSEIDQWKGTTEHLG 504

  Fly   455 RTLIGN--------SPEVRTEE 468
            :...||        :|.|...|
 Worm   505 KEYKGNHTLKAPITAPPVHVAE 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 34/140 (24%)
C2B_Synaptotagmin 352..488 CDD:175975 41/160 (26%)
sue-1NP_492083.2 C2 242..349 CDD:301316 30/111 (27%)
C2 389..513 CDD:301316 35/133 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.