DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and rbf-1

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001367825.1 Gene:rbf-1 / 175943 WormBaseID:WBGene00004316 Length:1123 Species:Caenorhabditis elegans


Alignment Length:388 Identity:98/388 - (25%)
Similarity:166/388 - (42%) Gaps:75/388 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 QVSNTTEESAPPTSPTGSLK---------SNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMN 188
            |:..:.::.|||.:|...:.         |:|.|..:.|||||.      .:.:.|......::.
 Worm   775 QLRTSLDDVAPPVAPISKMNGHIVSSEPTSSTTSNQNHTSVPIP------TVPVVPEEEEEKAIT 833

  Fly   189 AKLDHTKIDMTLYRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGT 253
            |..:          |.|:|.::         |::.::|.|......|.:.|:.|:||:....:|.
 Worm   834 ASTE----------SASEPGSL---------GSITLTLTYHSADKKLKMHLIRAKNLKAMDSNGF 879

  Fly   254 ADPYAKVRLLP--DKKNFWQTRIHKRTLNPVFDEQF-VFEVTAGVIDKRTVEILLYDFDAYSRHV 315
            :|||.|..|||  .|.....::..::||||.::|:. .:.:|....:|:.:.:.:.|.|......
 Worm   880 SDPYVKFHLLPGNTKATKLTSKTIEKTLNPEWNEEMSYYGITEDDKEKKILRVTVLDRDRIGSDF 944

  Fly   316 CIGGSKLHLANLDLSEQLKLWTPLSSA------SAQDMKVDLGDIMVSLAYLPSAERLMVVLIKA 374
             :|.:::.|..|:.:|..|....|.||      :.::...|.|.|.|.|.|......|.:.:.:.
 Worm   945 -LGETRIALKKLNDNEMKKFNLYLESALPVPQQTKEEENEDRGKINVGLQYNIQQGSLFININRC 1008

  Fly   375 RNLRIVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAF-----DVAKETLKN 434
            ..| :..|:...||||.||:|. |...|..:.||..::.||||.:||.|.|     |:.|:||:.
 Worm  1009 VEL-VGMDSTGFSDPYCKVSLT-PITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKTLQI 1071

  Fly   435 CVLEFTVVHDGLLGS-SEILGRTLIGNSPEVRTEEKIFFEEVFRAKNATA-QWVPLQEPANNL 495
            .|.:    ||  ||. .:.:|..|:..|                ||:... ||:...|....|
 Worm  1072 GVYD----HD--LGKHDDYIGGILLSTS----------------AKDERGRQWIKCIENPGTL 1112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 32/125 (26%)
C2B_Synaptotagmin 352..488 CDD:175975 43/142 (30%)
rbf-1NP_001367825.1 FYVE_2 220..342 CDD:396754
C2A_Rabphilin_Doc2 845..967 CDD:176000 31/131 (24%)
C2B_Rabphilin_Doc2 987..1119 CDD:176030 44/150 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X85
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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