DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and rbf-1

DIOPT Version :10

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001367825.1 Gene:rbf-1 / 175943 WormBaseID:WBGene00004316 Length:1123 Species:Caenorhabditis elegans


Alignment Length:388 Identity:98/388 - (25%)
Similarity:166/388 - (42%) Gaps:75/388 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 QVSNTTEESAPPTSPTGSLK---------SNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMN 188
            |:..:.::.|||.:|...:.         |:|.|..:.|||||.      .:.:.|......::.
 Worm   775 QLRTSLDDVAPPVAPISKMNGHIVSSEPTSSTTSNQNHTSVPIP------TVPVVPEEEEEKAIT 833

  Fly   189 AKLDHTKIDMTLYRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGT 253
            |..:          |.|:|.::         |::.::|.|......|.:.|:.|:||:....:|.
 Worm   834 ASTE----------SASEPGSL---------GSITLTLTYHSADKKLKMHLIRAKNLKAMDSNGF 879

  Fly   254 ADPYAKVRLLP--DKKNFWQTRIHKRTLNPVFDEQF-VFEVTAGVIDKRTVEILLYDFDAYSRHV 315
            :|||.|..|||  .|.....::..::||||.::|:. .:.:|....:|:.:.:.:.|.|......
 Worm   880 SDPYVKFHLLPGNTKATKLTSKTIEKTLNPEWNEEMSYYGITEDDKEKKILRVTVLDRDRIGSDF 944

  Fly   316 CIGGSKLHLANLDLSEQLKLWTPLSSA------SAQDMKVDLGDIMVSLAYLPSAERLMVVLIKA 374
             :|.:::.|..|:.:|..|....|.||      :.::...|.|.|.|.|.|......|.:.:.:.
 Worm   945 -LGETRIALKKLNDNEMKKFNLYLESALPVPQQTKEEENEDRGKINVGLQYNIQQGSLFININRC 1008

  Fly   375 RNLRIVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAF-----DVAKETLKN 434
            ..| :..|:...||||.||:|. |...|..:.||..::.||||.:||.|.|     |:.|:||:.
 Worm  1009 VEL-VGMDSTGFSDPYCKVSLT-PITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKTLQI 1071

  Fly   435 CVLEFTVVHDGLLGS-SEILGRTLIGNSPEVRTEEKIFFEEVFRAKNATA-QWVPLQEPANNL 495
            .|.:    ||  ||. .:.:|..|:..|                ||:... ||:...|....|
 Worm  1072 GVYD----HD--LGKHDDYIGGILLSTS----------------AKDERGRQWIKCIENPGTL 1112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 32/125 (26%)
C2B_Synaptotagmin 352..488 CDD:175975 43/142 (30%)
rbf-1NP_001367825.1 FYVE_2 219..342 CDD:426716
C2A_Rabphilin_Doc2 845..967 CDD:176000 31/131 (24%)
C2B_Rabphilin_Doc2 987..1119 CDD:176030 44/150 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.