DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and Rph3a

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_598202.2 Gene:Rph3a / 171039 RGDID:620073 Length:684 Species:Rattus norvegicus


Alignment Length:427 Identity:106/427 - (24%)
Similarity:179/427 - (41%) Gaps:78/427 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 PRGKYSSGNAGNLSPTSLKSEDNDPAFWVPASVTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTL 156
            |.|..::...|.....|.::..:||.:  |.:          |:...||.   |.|||..::   
  Rat   299 PGGSRAAPGPGRFPEQSTEAPPSDPGY--PGA----------VAPAREER---TGPTGGFQA--- 345

  Fly   157 SYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSLNEVR-- 219
                               |.|.:.|...:..|:....        :..:.:..|....:|..  
  Rat   346 -------------------APHTAGPYSQAAPARQPPP--------AEEEEEEANSYDSDEATTL 383

  Fly   220 GNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLP--DKKNFWQTRIHKRTLNPV 282
            |.|..||.||.....|...::.|:.|:|...:|.||||.|:.|||  .|.|..:|:..:.|.|||
  Rat   384 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 448

  Fly   283 FDEQFVFE-VTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQ------LKLWTPLS 340
            ::|...:. :|...:.::|:.|.:.|.|.:..:..||.::..|..|..:::      |:...|:.
  Rat   449 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMK 513

  Fly   341 SA----SAQDMKV-------------DLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSD 388
            .|    ||:.|.:             :.|.|:|||.|......|:|.:|:..:|..: ||...||
  Rat   514 RAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAM-DANGYSD 577

  Fly   389 PYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVHDGLLGSSEIL 453
            |:||:.|....||| .|.||.:::.||||.:||...:|:....|....|:.:|....:..|::.:
  Rat   578 PFVKLWLKPDMGKK-AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYI 641

  Fly   454 GRTLIGNSPEVRTEEKIFFEEVFRAKNATAQ-WVPLQ 489
            |...:|.|  .:.|....:.|..:.|:...: |..||
  Rat   642 GGCQLGIS--AKGERLKHWYECLKNKDKKIERWHQLQ 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 38/133 (29%)
C2B_Synaptotagmin 352..488 CDD:175975 42/136 (31%)
Rph3aNP_598202.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
FYVE_RP3A 88..168 CDD:277301
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..377 19/122 (16%)
PRK07764 <175..352 CDD:236090 16/89 (18%)
C2A_Rabphilin_Doc2 383..506 CDD:176000 36/122 (30%)
C2B_Rabphilin_Doc2 543..675 CDD:176030 41/135 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X85
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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