DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytalpha and Sytl4

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_536335.1 Gene:Sytl4 / 140594 RGDID:620204 Length:672 Species:Rattus norvegicus


Alignment Length:559 Identity:129/559 - (23%)
Similarity:224/559 - (40%) Gaps:143/559 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VVSAVGAALYTTCSKRYRL-----NWF---------------------------------EQNLL 61
            |:.:.|:.....|||...|     :||                                 .|:||
  Rat    93 VLESNGSWRCKVCSKEIELKKATGDWFYDQKVNRFAYRTGSDIIRMSLRRKPAVNKRETVGQSLL 157

  Fly    62 ESANEKD--------EDQQREALVAGAVGYNVDNVNEVPR---GK---------YSSGNAGNLSP 106
            :.....|        ::||:|..|          :.|||:   ||         ..|..|.:.|.
  Rat   158 QQTQMGDIWPGRRIIQEQQKEQSV----------LFEVPKLKSGKSALEAESESLDSYTADSDST 212

  Fly   107 TSLKSEDNDPAF--WVPASVTSTAAIQQQVS-----------------NTTEESAPPTSPTGS-- 150
            :...|.|....|  |...|... :.::::::                 ..|.:...|:..|.|  
  Rat   213 SRRDSLDKSGLFPEWKKMSAPK-SQVEKEIAPGNQNAVCGDEGDMIFKKNTRKVLRPSEYTKSVI 276

  Fly   151 -LKSNTLSYCS------TTSVP---IARSDK--------HVVLAMHPSRPRVSSMNAKLDHTKID 197
             |:...::..|      :.|||   :...|:        |:| .:|..:....||.:....:.|.
  Rat   277 DLRPEDVAQESGILGDRSKSVPGLSVDMEDEEEEEEDIDHLV-KLHRQKLARGSMQSGSSMSTIG 340

  Fly   198 --MTLYRSHSQPKTINPVSLNEVRGNLHVSLGYDPVGGLLNVRLLEAQNL-QPRQFSGTADPYAK 259
              |:||   |:......||   |.|.:..||.::.....|.:.:.|...| ...:....::||.|
  Rat   341 SMMSLY---SEAGDFGNVS---VTGKIAFSLKFEQKTQTLVIHVKECHQLAYADEAKKRSNPYVK 399

  Fly   260 VRLLPDK--KNFWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSKL 322
            ..|||||  :...:|.|.:.|:||::||.|.:|::..::.:||::..::....:.|:..:|.:::
  Rat   400 TYLLPDKSRQGKRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGRNTFLGEAEV 464

  Fly   323 HLANLDLSEQLKLWTPL----SSASAQDMKVDLGDIMVSLAYLPSAE----------------RL 367
            |:.:..|.::|....||    |:.|:..:....|:::|||.|:|:::                .|
  Rat   465 HMDSWKLDKKLDHCLPLHGKISTESSPGLPAHKGELVVSLKYIPASKLPVGGDRKKSKGGEGGEL 529

  Fly   368 MVVLIKARNLRIVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFD-VAKET 431
            .|.:.:|:||...... .:||.:||..|| |...|..||||.|.:.||||.||....:: |..|.
  Rat   530 QVWIKEAKNLTAAKSG-GTSDSFVKGYLL-PMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLED 592

  Fly   432 LKNCVLEFTVVHDGLLGSSEILGRTLIGNSPEVRTEEKI 470
            |::..||.||.....|.|::.||...:|....:.:.|.:
  Rat   593 LQHMCLELTVWDREPLASNDFLGGVRLGVGTGISSGEVV 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 33/129 (26%)
C2B_Synaptotagmin 352..488 CDD:175975 43/136 (32%)
Sytl4NP_536335.1 FYVE_Slp4 58..107 CDD:277303 3/13 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 199..222 5/22 (23%)
C2A_SLP-4_5 358..482 CDD:175995 31/123 (25%)
C2B_SLP_1-2-3-4 497..662 CDD:175987 43/137 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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