DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and tc2n

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_009305708.1 Gene:tc2n / 101885722 -ID:- Length:465 Species:Danio rerio


Alignment Length:498 Identity:105/498 - (21%)
Similarity:186/498 - (37%) Gaps:116/498 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 ANEKDED--QQREALVAGAVGYNVDNV--------NEV-------------PRG-KYSSGNAGNL 104
            |::|:|.  |..|..|...||.:.|.:        .||             ||| :||..|.|..
Zfish    14 ASKKNEPEIQTAECNVKRGVGVSEDYLLSKLPPDGREVPFIIPTFKPSYIQPRGAQYSGHNIGQQ 78

  Fly   105 SPT-SLKSEDNDPAFWVPASVTSTAAIQQ-----QVSNTTEESAPPTSPTGSLK----SNTLSYC 159
            |.| |..:|..          ...|.:.|     .|:..:.......|| |||:    .|.::|.
Zfish    79 STTRSTYAERK----------AELAGVSQMMYDPDVNLNSSHMISYVSP-GSLRRPTLKNRVNYN 132

  Fly   160 STTSVPIARSDKHVVLAMHPSRPR--------VSSMNAKLDHTKIDMTLYRSHSQPKTINPVSL- 215
            ..|.:..:.:.:..:.....|.|:        |||:.:...      ::..|....:::..::| 
Zfish   133 PGTGLDHSDAQRLCLSMFDLSNPQGRVERYDSVSSIQSSTS------SVQDSFGSSRSLESITLS 191

  Fly   216 ----NEVRGNLHVSLGYDPVGGLLNVRLLEAQNLQ------PRQFSGTADPYAKVRLLPDKKNFW 270
                :...|.:.|.|.|:.....:.:.|::..:|.      .:|..|     .|..:..:|...:
Zfish   192 GDERDREPGKVCVHLKYEAAVEQVWITLVKCTDLSVYNERVEQQKIG-----VKGVITVNKPVRF 251

  Fly   271 QTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYS-RHVCIGGSKLHLANLDLSEQLK 334
            ::.:.:.:.:.||.|.|||.:....|.:..:.:.|   .|:: |...:|...|.|.:|. .::.|
Zfish   252 KSTLKEASEDTVFMETFVFTLNLEQIRRSALVLRL---QAHTPRKRTLGECVLSLRSLG-PQETK 312

  Fly   335 LWTPLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSDP-----YVKVT 394
            .|......|  ...|...::.::|.:.|...|:.:.::..:||      .:||.|     :|||.
Zfish   313 HWLEFKHPS--KTHVCHAELQLALCFQPVNSRMQLQILSTQNL------PSSSSPLTQSYFVKVD 369

  Fly   395 LLGPGGKKIKKRKTGVQRGTLNPV-YNEALAFDVAKETLKNCVLEFTVVHDGLLGSSEILGRTLI 458
            |||. ||.:.||||...:.:...| :.|.|.|.:..:. .|..|...:.....:....:||:.|:
Zfish   370 LLGE-GKFLLKRKTKAVKSSGGQVQWGEVLHFPITSQD-HNLQLSVKLYSRSSVRRKHLLGQVLL 432

  Fly   459 ---GNSPEVRTEEKIFFEEVFRAKNATAQWVPLQEPANNLATS 498
               .:|||                 |..||.........:.||
Zfish   433 SLDSSSPE-----------------AVEQWKDAMANPEKVVTS 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 26/129 (20%)
C2B_Synaptotagmin 352..488 CDD:175975 35/144 (24%)
tc2nXP_009305708.1 C2 215..317 CDD:301316 22/110 (20%)
C2B_Tac2-N 328..462 CDD:176074 37/156 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.