DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and syt1b

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001082930.1 Gene:syt1b / 100034471 ZFINID:ZDB-GENE-060503-166 Length:388 Species:Danio rerio


Alignment Length:360 Identity:109/360 - (30%)
Similarity:189/360 - (52%) Gaps:41/360 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 AGNLSPTSLKSEDNDPAFWVPAS-VTSTAAIQQQVSNTTEESAPPTSPTGSLKSNTLSYCSTTSV 164
            |.:.||.||..:::.    :|.| ::|..|:..|  .||.:|.     ..|::|..|:......:
Zfish    10 ASSSSPASLAQKESK----IPGSTISSPTAVHPQ--TTTADSL-----VHSIRSKFLNELHKVPL 63

  Fly   165 P------IARSDKHVVLA--------MHPSRPRVSSMNAKLDHTKIDMTLYRSHSQPKTINPVSL 215
            |      :......:||:        |...:.:......|.:...|:|:..:.....:.::..:.
Zfish    64 PSWATAALGFITVFIVLSCCLCIFRKMIFKKKKEKGGKEKNEKNDINMSNVKEEGTKQAVHHTTD 128

  Fly   216 NEVR------------GNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSGTADPYAKVRLLPDKKN 268
            ::.:            |.|..:|.|:.....|.|.::.|:.|.....|||:|||.||.||||||.
Zfish   129 SDAKEEDSESKEAQKLGKLLYTLDYNFTDSTLIVGVIRAEGLAAMDMSGTSDPYVKVYLLPDKKK 193

  Fly   269 FWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCIGGSKLHLANLDLSEQL 333
            .::|::|::||.|.|:|.|.|:|....:..:|:.:.:||||.:|:|..||..:|.:..:|.|...
Zfish   194 KFETKVHRKTLEPTFNEHFTFKVPYAELGGKTLVMTVYDFDRFSKHDAIGDVRLQMNKVDFSHLT 258

  Fly   334 KLWTPLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLRIVDDARNSSDPYVKVTLLGP 398
            :.|..|..|..::.: .||||.:||.|:|:|.:|.||:::|:||:.: |....||||||:.|: .
Zfish   259 EEWRDLQKAEKEEQE-RLGDICLSLRYVPTAGKLTVVVLEAKNLKKM-DVGGLSDPYVKIHLM-Q 320

  Fly   399 GGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLK 433
            .||::||:||.:::.||||.|||:.:|:|..|.::
Zfish   321 NGKRLKKKKTTIKKNTLNPYYNESFSFEVPSEQIQ 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 46/134 (34%)
C2B_Synaptotagmin 352..488 CDD:175975 38/82 (46%)
syt1bNP_001082930.1 C2A_Synaptotagmin-1-5-6-9-10 143..266 CDD:176031 46/122 (38%)
C2 275..376 CDD:301316 39/83 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X85
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.