DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytalpha and syt3

DIOPT Version :9

Sequence 1:NP_001188832.1 Gene:Sytalpha / 35068 FlyBaseID:FBgn0261089 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_005164031.1 Gene:syt3 / 100000615 ZFINID:ZDB-GENE-090601-1 Length:566 Species:Danio rerio


Alignment Length:540 Identity:144/540 - (26%)
Similarity:234/540 - (43%) Gaps:134/540 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 THSLSAGEMDIVIREEDISLAQIGVYASVSFL--VVSAVGAALYT-TCSKRYRLNWFEQNLLESA 64
            :.|.|..|...::|..:   .||....|||.|  :|:..|..|.: :....::|.|...      
Zfish    28 SQSASCQEFSYMMRGPN---RQINTEISVSLLSVIVTFCGIVLLSVSLFVSWKLCWLPW------ 83

  Fly    65 NEKDED----QQREALVAGAVGYNVDNVNEVPRGKYSSGNAGNLSPTSLKSEDNDPAFWVPASVT 125
              :|::    .....|:.|..|.          |....|...:|.|..|:.:|...:    :|:.
Zfish    84 --RDKEGGGLSLTSGLLPGGAGL----------GGVGGGGGASLLPPLLQRKDTHSS----SSLY 132

  Fly   126 STAAIQQQ------------------------------------------------VSNTTEESA 142
            .|.:.|.|                                                :|.|:.| .
Zfish   133 PTLSQQGQHHPHFSDVMGVEGGGGLVVGGVVGGPQEMQEHSYLDMDSYPNNAATLKLSQTSPE-L 196

  Fly   143 PPTSPTGSLKSNTLSYCSTTSVPIARSDKHVVLAMHPSRPRVSSMNAKLDHTKIDMTLYRSHSQP 207
            ||.:..||         :...:|.|.|.:.|.....|...::||.:              .|.:.
Zfish   197 PPATEGGS---------AAKDLPNAHSQQQVTTRPKPMTHQLSSPD--------------FHGEE 238

  Fly   208 KTINPVSLNEVR--------------------GNLHVSLGYDPVGGLLNVRLLEAQNLQPRQFSG 252
            |:....|:.:::                    |.:...|.|......|.|::|:|.:|..:..:|
Zfish   239 KSEQLTSIGQIKPELYRLRQGDQGDGKQGNNCGKISFLLRYAFNTEQLVVKILKALDLPAKDANG 303

  Fly   253 TADPYAKVRLLPDKKNFWQTRIHKRTLNPVFDEQFVFEVTAGVIDKRTVEILLYDFDAYSRHVCI 317
            .:|||.|:.||||:|..:||::|::||||||:|.|.|.|....:..|.:...:||||.:|||..|
Zfish   304 FSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNETFQFGVPLAELHARKLHFSVYDFDRFSRHDLI 368

  Fly   318 GGSKLHLAN-LDLSE---QLKLWTPLSSASAQDMKVDLGDIMVSLAYLPSAERLMVVLIKARNLR 378
            |  ::.:.| ||.||   :..:|..:...:|:  |.|||::..||.|||:|.||.|.:|||.||:
Zfish   369 G--QVVVDNLLDFSEGTGEKPIWRDIVEGTAE--KADLGELNFSLCYLPTAGRLTVTIIKATNLK 429

  Fly   379 IVDDARNSSDPYVKVTLLGPGGKKIKKRKTGVQRGTLNPVYNEALAFDVAKETLKNCVLEFTVVH 443
            .: |....||||||.:|:.. |:::|||||.:::.||||.|||||.||:..|.:::..|...|:.
Zfish   430 AM-DLTGFSDPYVKASLVCE-GRRLKKRKTSIKKNTLNPTYNEALVFDIPNENIESVSLIIAVMD 492

  Fly   444 DGLLGSSEILGRTLIGNSPE 463
            ...:|.:|::|...:|:..:
Zfish   493 YDCIGHNEVIGMCRMGSDAD 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytalphaNP_001188832.1 C2A_Synaptotagmin-8 218..341 CDD:176033 47/146 (32%)
C2B_Synaptotagmin 352..488 CDD:175975 47/112 (42%)
syt3XP_005164031.1 C2A_Synaptotagmin-1-5-6-9-10 269..394 CDD:176031 47/126 (37%)
C2B_Synaptotagmin-3-5-6-9-10 403..536 CDD:176048 47/112 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X85
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.780

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