DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oli and olig2

DIOPT Version :9

Sequence 1:NP_001188830.1 Gene:Oli / 35066 FlyBaseID:FBgn0032651 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_835201.1 Gene:olig2 / 325288 ZFINID:ZDB-GENE-030131-4013 Length:273 Species:Danio rerio


Alignment Length:188 Identity:72/188 - (38%)
Similarity:98/188 - (52%) Gaps:45/188 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 PSAPEKPLSPTAAAIAAIAISGGTTTVAVSS----GGASGSGSNSGKQ----------KNR---- 124
            ||:||......:|...::..||..::....|    .||...|.:|.::          |:|    
Zfish    12 PSSPEGDDLFLSAVKKSVGFSGAVSSTQSDSPPELRGADMRGISSAEEDSMALKMLSKKDRKLLS 76

  Fly   125 --QGKTVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLLAKNYILMQQNALE 187
              :.:::||.||:|||:||||||.|:|.||.|:||||.|||||||||||||||:|||||..|:||
Zfish    77 ENELQSMRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLSNSLE 141

  Fly   188 ELRRLLAYIQ-----------------STTGAAPLDLGAFPAAAKLQALLQGPHNEPP 228
            |::||::.|.                 :.|.||...|...|||..        |:..|
Zfish   142 EMKRLVSEIYGGGSGAHHAGFHPSSCGTLTHAAAAPLPGHPAAVS--------HSSHP 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OliNP_001188830.1 HLH 134..188 CDD:197674 41/53 (77%)
olig2NP_835201.1 HLH 88..142 CDD:197674 41/53 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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