DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oli and olig4

DIOPT Version :9

Sequence 1:NP_001188830.1 Gene:Oli / 35066 FlyBaseID:FBgn0032651 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_955808.1 Gene:olig4 / 324857 ZFINID:ZDB-GENE-030131-3580 Length:244 Species:Danio rerio


Alignment Length:164 Identity:67/164 - (40%)
Similarity:86/164 - (52%) Gaps:38/164 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GTTTVAVSSGGASGSGSNSGKQKNRQG------KTVRLNINARERRRMHDLNDALDELRSVIPYA 158
            |.|....|..|.    .|:||.:.|..      :.:||.:|:|||:||||||.|:|.||.|:|||
Zfish    33 GETVQQKSEKGL----QNAGKTRTRADLSKDDLQDLRLKVNSRERKRMHDLNQAMDGLREVMPYA 93

  Fly   159 HSPSVRKLSKIATLLLAKNYILMQQNALEELRRLL-----AYIQS--------TTGAAP-LDLGA 209
            ..|||||||||:|||||:|||||..::|||:::|:     |..||        .|.||| ..|..
Zfish    94 QGPSVRKLSKISTLLLARNYILMLSSSLEEMKKLVGDVYGANAQSHSARRVLPPTSAAPATQLPL 158

  Fly   210 FPAAAKLQALL--------------QGPHNEPPT 229
            ...|..|..|:              |.||:.|.|
Zfish   159 LSLAPSLHPLVGSTSAVSHTTTNGAQTPHSPPST 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OliNP_001188830.1 HLH 134..188 CDD:197674 38/53 (72%)
olig4NP_955808.1 HLH 69..123 CDD:197674 38/53 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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