DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oli and atoh1c

DIOPT Version :10

Sequence 1:NP_523592.1 Gene:Oli / 35066 FlyBaseID:FBgn0032651 Length:232 Species:Drosophila melanogaster
Sequence 2:XP_021336148.1 Gene:atoh1c / 100498672 ZFINID:ZDB-GENE-090805-1 Length:204 Species:Danio rerio


Alignment Length:115 Identity:44/115 - (38%)
Similarity:56/115 - (48%) Gaps:14/115 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 PSAP----EKPLSPTAAAIAAIAISGGTTTVAVSSGGASGSGSNSGKQKNRQGKTVRLNINARER 138
            |.||    |:.|...|:......:....|.::.|    |...|:..:.:.|:    ||..|||||
Zfish    25 PKAPMGWREEQLQDRASCDPCALVQLRLTGLSYS----SEEQSSIARARRRR----RLAANARER 81

  Fly   139 RRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLLAKNYILMQQNALEE 188
            |||..||.|.|.||||||...|.  |||||..||.:|:.||......||:
Zfish    82 RRMLGLNVAFDRLRSVIPNVESD--RKLSKSETLQMAQIYISTLSELLED 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OliNP_523592.1 bHLH_TS_bHLHe22_bHLHb5 129..198 CDD:381524 33/60 (55%)
atoh1cXP_021336148.1 bHLH_SF 80..127 CDD:469605 26/48 (54%)

Return to query results.
Submit another query.