DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oli and atoh1

DIOPT Version :9

Sequence 1:NP_001188830.1 Gene:Oli / 35066 FlyBaseID:FBgn0032651 Length:232 Species:Drosophila melanogaster
Sequence 2:XP_004911142.1 Gene:atoh1 / 100488309 XenbaseID:XB-GENE-6452084 Length:260 Species:Xenopus tropicalis


Alignment Length:80 Identity:40/80 - (50%)
Similarity:48/80 - (60%) Gaps:12/80 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 GASGSGSNSGKQKNRQGKTVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLL 174
            |..|.|. .|.||.|     ||..|||||||||.||.|.|:||:|||..::.  :||||..||.:
 Frog    95 GGPGKGP-GGVQKQR-----RLAANARERRRMHGLNHAFDQLRNVIPSFNND--KKLSKYETLQM 151

  Fly   175 AKNYILMQQNALEEL 189
            |:.||    |||.:|
 Frog   152 AQIYI----NALSDL 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OliNP_001188830.1 HLH 134..188 CDD:197674 30/53 (57%)
atoh1XP_004911142.1 bHLH_TS_ATOH1 103..166 CDD:381556 37/71 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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