DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oli and neurod4

DIOPT Version :10

Sequence 1:NP_523592.1 Gene:Oli / 35066 FlyBaseID:FBgn0032651 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_001124513.1 Gene:neurod4 / 100124310 XenbaseID:XB-GENE-972704 Length:316 Species:Xenopus tropicalis


Alignment Length:110 Identity:44/110 - (40%)
Similarity:56/110 - (50%) Gaps:23/110 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 RLNINARERRRMHDLNDALDELRSVIP-YAHSPSVRKLSKIATLLLAKNYILMQQNALEELRRLL 193
            |:..|||||.|||.|||||:.||.|:| |:   ..:|||||.||.||:|||....:.||:     
 Frog    81 RVKANARERTRMHGLNDALENLRRVMPCYS---KTQKLSKIETLRLARNYIWALSDILEQ----- 137

  Fly   194 AYIQSTTGAAPLDL---GAFPAAAKL---------QALLQGPHNE 226
              .|||.|...|::   |.....:.|         ||:....|.|
 Frog   138 --GQSTEGKGFLEMLCKGLSQPTSNLVAGCMQLGPQAMFLDKHEE 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OliNP_523592.1 bHLH_TS_bHLHe22_bHLHb5 129..198 CDD:381524 33/68 (49%)
neurod4NP_001124513.1 bHLH_TS_NeuroD4_ATOH3 <69..137 CDD:381564 32/58 (55%)
Neuro_bHLH 138..256 CDD:463621 11/43 (26%)

Return to query results.
Submit another query.