DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and VLN4

DIOPT Version :9

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001190869.1 Gene:VLN4 / 829139 AraportID:AT4G30160 Length:983 Species:Arabidopsis thaliana


Alignment Length:1080 Identity:219/1080 - (20%)
Similarity:382/1080 - (35%) Gaps:313/1080 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VDATFRKVAKHAITFAIWKIDEDRLEAVQRSHYGTFYDSCAYIIY--AASLSGHYANHETITREQ 84
            :|..|:...:.| ...||:|:......:.:|..|.|:...:||:.  .|..:|            
plant     8 LDPAFQGAGQKA-GIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTG------------ 59

  Fly    85 KPNVSLERYIHYWLGKNVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFK----- 144
                :|...|||||||:.|:........|..|||:.||..:..|||.|..|:.:||||||     
plant    60 ----ALRHDIHYWLGKDTSQDEAGTAAVKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIP 120

  Fly   145 -KGYEFRFSVRSG--ALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYVW 206
             :|     .|.||  .:::.....||| :...|.:..::......|..|.|.:.:|.|.:..:.:
plant   121 QEG-----GVASGFKHVVAEEHITRLF-VCRGKHVVHVKEVPFARSSLNHDDIYILDTKSKIFQF 179

  Fly   207 IGRSSSGIERRSALDWVQ-----KHCSGSPITIVDDGYEQAMSQEHKELW---NTMLPLKKRMVC 263
            .|.:||..||..||:.||     .|.....:..|:||...| ..:..|.|   ....||.::.. 
plant   180 NGSNSSIQERAKALEVVQYIKDTYHDGTCEVATVEDGKLMA-DADSGEFWGFFGGFAPLPRKTA- 242

  Fly   264 QASQLVSEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKDDLSDAHGVYLLDNYGQSIWLWVGG 328
                 ..|...|||:..|:: |.::|:.:..:   |...|.::.|.:..|:|| .|..:::|:|.
plant   243 -----NDEDKTYNSDITRLF-CVEKGQANPVE---GDTLKREMLDTNKCYILD-CGIEVFVWMGR 297

  Fly   329 QAPQADALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWL----NVWQENTRGHKP 389
            .....|...|.......::..:.|.:.: :|::||.|.|.|:..|.:|.    ....|:.||...
plant   298 TTSLDDRKIASKAAEEMIRSSERPKSQM-IRIIEGFETVPFRSKFESWTQETNTTVSEDGRGRVA 361

  Fly   390 VSTKFGKLDAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQ---VQEVPISKTVVFTTNASFVV 451
            ...:...::...|.:......:.|:..|..|...::||.|..   :|....||   |.:...:|.
plant   362 ALLQRQGVNVRGLMKAAPPKEEPQVFIDCTGNLQVWRVNGQAKTLLQAADHSK---FYSGDCYVF 423

  Fly   452 KYSVQCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEPGMFVQLYEFDEP 516
            :||      .|.:...   :.:|..|.|.::..|....|...|....:.:|......::||..||
plant   424 QYS------YPGEEKE---EVLIGTWFGKQSVEEERGSAVSMASKMVESMKFVPAQARIYEGKEP 479

  Fly   517 PHFLQIFEGKLIIRRG------------QRTEMPYNGNSNALLDTFLLKVYGDASYNAKAVE-ET 568
            ..|..|.:..::.:.|            :..:..||.|..|     |.::.|....|.:|:: :.
plant   480 IQFFVIMQSFIVFKGGISSGYKKYIAEKEVDDDTYNENGVA-----LFRIQGSGPENMQAIQVDP 539

  Fly   569 HLSSISSKDCYVI-KTNHVWVWCGQSSTGDAREMAKAVGALMGENS---LVLEGKESKEFWQSVA 629
            ..:|::|...|:: ..:.|:.|.|..||...:|:|:....|:..|.   ...||.||::||:.: 
plant   540 VAASLNSSYYYILHNDSSVFTWAGNLSTATDQELAERQLDLIKPNQQSRAQKEGSESEQFWELL- 603

  Fly   630 MYFNQTLVINGNGNSCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFL 694
                                               ||...       |.:..:..:|.....||.
plant   604 -----------------------------------GGKAE-------YSSQKLTKEPERDPHLFS 626

  Fly   695 VWWQQSSLRYE---------EILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTA--IAQ 748
            ..:.:..|:..         ||..|.|.||.::..:|:|..|..:||:|.:...:.:..|  |.:
plant   627 CTFTKEVLKVRILLKSFFVTEIYNFTQDDLMTEDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGE 691

  Fly   749 SYVQ----------NAPFGRRSATALAVVRQFQEPNVFKGFFESWQND----YGKNFHSYEKMRK 799
            .:::          .||        :.|:.:..||:.|..||.||.:.    :|.:|....|:.|
plant   692 KFIEKDSLLEKLSPEAP--------IYVIMEGGEPSFFTRFFTSWDSSKSAMHGNSFQRKLKIVK 748

  Fly   800 DLGNKV-------------------------TSNCCFASE-----GSALILNNRQKDFDG----- 829
            :.|..|                         :.:..|:.:     |.:...|.....|:.     
plant   749 NGGTPVADKPKRRTPASYGGRASVPDKSQQRSRSMSFSPDRVRVRGRSPAFNALAATFESQNARN 813

  Fly   830 --------HKKYPLTVL------------------------------------------------ 838
                    .|.||.:|.                                                
plant   814 LSTPPPVVRKLYPRSVTPDSSKFAPAPKSSAIASRSALFEKIPPQEPSIPKPVKASPKTPESPAP 878

  Fly   839 ------------------------------------IQEMDMLP---------------PDINPL 852
                                                :::.:.||               .||:..
plant   879 ESNSKEQEEKKENDKEEGSMSSRIESLTIQEDAKEGVEDEEDLPAHPYDRLKTTSTDPVSDIDVT 943

  Fly   853 KREVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF 892
            :||.:|:.::|...|.|:...|.:|||||:.:.|...:||
plant   944 RREAYLSSEEFKEKFGMTKEAFYKLPKWKQNKFKMAVQLF 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:301701 38/128 (30%)
gelsolin_like 164..254 CDD:200436 25/97 (26%)
gelsolin_S3_like 276..375 CDD:200448 24/98 (24%)
GEL 424..526 CDD:214590 24/104 (23%)
ADF_gelsolin 551..625 CDD:301701 20/78 (26%)
gelsolin_like 689..780 CDD:200436 23/111 (21%)
VHP 857..892 CDD:128458 11/34 (32%)
VLN4NP_001190869.1 gelsolin_S1_like 12..124 CDD:200446 39/133 (29%)
gelsolin_S2_like 139..217 CDD:200445 21/78 (27%)
gelsolin_S3_like 253..343 CDD:200448 22/95 (23%)
gelsolin_S4_like 386..486 CDD:200449 25/111 (23%)
gelsolin_S5_like 517..608 CDD:200444 26/131 (20%)
gelsolin_S6_like 621..729 CDD:200447 26/115 (23%)
VHP 949..983 CDD:280388 11/33 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0443
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100298
Panther 1 1.100 - - O PTHR11977
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.780

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