DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and VLN1

DIOPT Version :9

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001189635.1 Gene:VLN1 / 817539 AraportID:AT2G29890 Length:933 Species:Arabidopsis thaliana


Alignment Length:1037 Identity:220/1037 - (21%)
Similarity:388/1037 - (37%) Gaps:277/1037 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VDATFRKVAKHAITFAIWKIDEDRLEAVQRSHYGTFYDSCAYIIYAASLSGHYANHETITREQKP 86
            :|:.|:.|...: ...||.:...:|.::.:|.:|.|:...||::.           .|..|:   
plant     8 IDSAFQGVGTKS-GLEIWCVYNKQLISIPKSSFGKFHSGNAYLVL-----------RTFLRK--- 57

  Fly    87 NVSLERY-IHYWLGKNVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKK---GY 147
             :...:| ||||||.:.:|.:......|..:||:.||..:..|||.|..|:.:||||||.   ..
plant    58 -IESPQYDIHYWLGIDANEVDSILASDKALDLDAALGCCTVQYREVQGQETEKFLSYFKPCIIPV 121

  Fly   148 EFRFSVRSGALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYVWIGRSSS 212
            |.::|.::| :.....:..|.:......:|..||..:. |..|.|.|.:|.|.:..:::.|.:||
plant   122 EGKYSPKTG-IAGETYQVTLLRCKGDHVVRVKEVPFLR-SSLNHDDVFILDTASKVFLFAGCNSS 184

  Fly   213 GIERRSALDWVQ-----KHCSGSPITIVDDGYEQAMSQEHKELWNTM---LPLKKRMVCQASQLV 269
            ..|:..|::.|:     ||.....:..::|| :.:...:..|.|:..   .|:.|    .:|...
plant   185 TQEKAKAMEVVEYIKDNKHDGRCEVATIEDG-KFSGDSDAGEFWSFFGGYAPIPK----LSSSTT 244

  Fly   270 SEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKD-DLSDAHGVYLLDNYGQSIWLWVGGQAPQA 333
            .|..  .:....::..:.:|.||    ..|..:.| |:.:.:..|:||.:.: :::|:|......
plant   245 QEQT--QTPCAELFWIDTKGNLH----PTGTSSLDKDMLEKNKCYMLDCHSE-VFVWMGRNTSLT 302

  Fly   334 DALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWLNVWQEN--TRGHKPVSTKFGK 396
            :..:::.:...|::|:.....|.:|.:.||.|...|:..|..|....:.:  ..|.:.|:..| |
plant   303 ERKTSISSSEEFLRKEGRSTTTSLVLLTEGLENARFRSFFNKWPQTVESSLYNEGREKVAALF-K 366

  Fly   397 LDAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQVQEVPI-SKTVVFTTNASFV-VKYSVQCAT 459
            ...:.:.|.|. ..|..|..:.|....::||.||.|..:.| .:|.:||.:...| .||:.:..|
plant   367 QKGYDVEELPD-EEDDPLYTNCRDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYLVQYKYTYKERT 430

  Fly   460 VVPADLASVGIKTIIYQWNGSEASVESISRADKFAKAS--FDGLKEPGMFVQLYEFDEPPHFLQI 522
                       :.::|.|.|.| |::. .|||....||  ....|...:...:|:.:||..|..:
plant   431 -----------EHLLYVWIGCE-SIQQ-DRADAITNASAIVGTTKGESVLCHIYQGNEPSRFFPM 482

  Fly   523 FEGKLIIRRG------------QRTEMPYNGNSNALLDTFLLKVYGDASYNAKAVEETHL-SSIS 574
            |:..::.:.|            ::....||.|..:     |.:|.|.:..|.:|::...: :|::
plant   483 FQSLVVFKGGLSRRYKVLLAEKEKIGEEYNENKAS-----LFRVVGTSPRNMQAIQVNLVATSLN 542

  Fly   575 SKDCYVIKTN-HVWVWCGQSSTGDAREMAKAVGALMGENS---LVLEGKESKEFWQSVAMYFNQT 635
            |...|:::.. ..:.|.|:.|:....|:...:...:..:.   .:.||.|:..||.         
plant   543 SSYSYILQYGASAFTWIGKLSSDSDHEVLDRMLYFLDTSCQPIYIREGNETDTFWN--------- 598

  Fly   636 LVINGNGN-------------------SCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTS 681
             ::.|...                   ||||                  ||              
plant   599 -LLGGKSEYPKEKEMRKQIEEPHLFTCSCSS------------------GN-------------- 630

  Fly   682 VPSKPRPPVQLFLVWWQQSSLRYEEILGFDQQDLSSDCTYILDTGSLTYVWLGSQA--PNQERYT 744
                              ..|:.:||..|.|.||:::..::||..|..|||:||.:  .::|...
plant   631 ------------------DVLKVKEIYNFVQDDLTTEDVFLLDCQSEVYVWIGSNSNIKSKEEAL 677

  Fly   745 AIAQSYVQN--APFGRRSATALAVVRQFQEPNVFKGFFESW----QNDYGKNFH----------- 792
            .:...:::.  ...|....|.:.||.:..||..|..||| |    .|.:|.:|.           
plant   678 TLGLKFLEMDILEEGLTMRTPVYVVTEGHEPPFFTRFFE-WVPEKANMHGNSFERKLASLKGKKT 741

  Fly   793 --------SYEKMRKDLGNKVTSNCCFASEGS----------ALILNNRQKDF------------ 827
                    .|....||..::...:...:|.||          .|:..:..:|.            
plant   742 STKRSSGSQYRSQSKDNASRDLQSRSVSSNGSERGVSPCSSEKLLSLSSAEDMTNSSNSTPVVKK 806

  Fly   828 -----------DGH---------------KKYPLTVLIQE------------------------- 841
                       ||.               .||...|..||                         
plant   807 LFSESLLVDPNDGKVSYVNLFTERLGYMTHKYQKRVARQESSSKSDISKQKPRVGINSDLSSLES 871

  Fly   842 ---------MDMLPP--DINPLKREVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF 892
                     :|...|  ||:..:||.:||..:|...|.|:..||..|||||:.:||....||
plant   872 LAYSYEQLRVDSQKPVTDIDATRREAYLTEKEFEERFGMAKSEFYALPKWKQNKLKISLHLF 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:301701 36/124 (29%)
gelsolin_like 164..254 CDD:200436 22/94 (23%)
gelsolin_S3_like 276..375 CDD:200448 20/99 (20%)
GEL 424..526 CDD:214590 29/105 (28%)
ADF_gelsolin 551..625 CDD:301701 15/78 (19%)
gelsolin_like 689..780 CDD:200436 23/94 (24%)
VHP 857..892 CDD:128458 14/34 (41%)
VLN1NP_001189635.1 gelsolin_S1_like 12..123 CDD:200446 36/126 (29%)
gelsolin_S2_like 140..231 CDD:200445 22/92 (24%)
gelsolin_S3_like 245..344 CDD:200448 21/105 (20%)
gelsolin_S4_like 383..483 CDD:200449 30/112 (27%)
gelsolin_S5_like 514..605 CDD:200444 19/105 (18%)
gelsolin_S6_like 618..717 CDD:200447 32/149 (21%)
VHP 898..933 CDD:128458 14/34 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0443
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100298
Panther 1 1.100 - - O PTHR11977
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.780

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