DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and Avil

DIOPT Version :9

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_038935869.1 Gene:Avil / 79253 RGDID:620301 Length:848 Species:Rattus norvegicus


Alignment Length:952 Identity:256/952 - (26%)
Similarity:416/952 - (43%) Gaps:183/952 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LKVDATFRKVAKH--AITFAIWKIDEDRLEAVQRSHYGTFYDSCAYIIYAASLSGHYANHETITR 82
            :.:.:.||.|...  .||   |:|::..|..|..|.:|.||:...|||.:....|..        
  Rat     1 MSLSSAFRTVTNDPGIIT---WRIEKMELVLVPLSAHGNFYEGDCYIILSTRRVGSL-------- 54

  Fly    83 EQKPNVSLERYIHYWLGKNVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGY 147
                   |.:.||:|:||:.|:..:|.......:||.|||.....:||.|..||..|..|||:|.
  Rat    55 -------LSQNIHFWIGKDSSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKRGI 112

  Fly   148 EFRFSVRSGALISAPQR--------PRLFQLYARKWLRSIEVA---------------------- 182
            .:    :.|.:.|..:.        .||..:..::.:|:.||:                      
  Rat   113 IY----KKGGVASGMKHVETNTYDVKRLLHVKGKRNIRATEVSPTHDCLGPVFLPWPLRPPQTAL 173

  Fly   183 ------TIDWSHFNSDYVMVLQTDNLTYVWIGRSSSGIERRSAL----DWVQKHCSG-SPITIVD 236
                  .:.|..||...|.:|....:...|.|..|:..||..|:    |...:...| :.|.:::
  Rat   174 ASPMQVEMSWDSFNQGDVFLLDLGMVIIQWNGPESNSGERLKAMLLAKDIRDRERGGRAEIGVIE 238

  Fly   237 DGYEQAMSQEHKELWNTMLPLKKRMVCQASQLVSEYAD-YNSNKFRIYKCNQ-RGRLHLDQLDVG 299
            ...|.|..:....|.||   |.:|.:.:.: :..|..| ...:...:|..:. .|:|.:.:: ..
  Rat   239 GDKEAASPELMTVLQNT---LGRRSIIKPA-VPDEVTDQQQKSTIMLYHVSDTTGQLSVTEV-AT 298

  Fly   300 MPAKDDLSDAHGVYLLDNYGQSIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDNTLVVRVLEGH 364
            .|...:|.:....|:||..|..|::|.|..|.:.:..:||.....|:|.|.||.:|.|..|.:|.
  Rat   299 RPLVQELLNHDDCYILDQSGTKIYVWKGKGATKVEKQAAMSKALDFIKMKGYPSSTNVETVNDGA 363

  Fly   365 EPVEFKRLFANWLNVWQENTRGHKPVST-KFGKL-----DAHSLCERPKMAADTQLVDDGRGERV 423
            |...||:||..| :|..:.|...|..|. |..|:     |...|..:|::||..::||||.|:..
  Rat   364 ESAMFKQLFQKW-SVKDQTTGLGKTFSIGKIAKIFQDKFDVTLLHTKPEVAAQERMVDDGNGKVE 427

  Fly   424 IYRVFGDQVQEVPISKTVVFTTNASFVVKYSVQCATVVPADLASVGIKTIIYQWNGSEASVESIS 488
            ::|:  :.::.||:.    :..:..|   |...|..|:.....:.....|:|.|.|..||     
  Rat   428 VWRI--ENLELVPVE----YQWHGFF---YGGDCYLVLYTYDVNGKPCYILYIWQGRHAS----- 478

  Fly   489 RADKFAKASFDGLKEPGMF------VQLYEFDEPPHFLQIFEGKLIIRRGQRTEMPYNGNSNALL 547
             .|:.|.:::..::....|      |::....||.||:.||:|||:|..|..:.   .||.....
  Rat   479 -QDELAASAYQAVEVDQQFGGAPVQVRVSMGKEPRHFMAIFKGKLVIYEGGTSR---KGNVEPDP 539

  Fly   548 DTFLLKVYGDASYNAKAVE-ETHLSSISSKDCYVIKT--NHVWVWCGQSSTGDAREMAKAVGALM 609
            ...|.:::|:...|.|||| ....||::|.|.:::.|  .| ::|.|:.|:||.|.|||.:..|:
  Rat   540 PVRLFQIHGNDKSNTKAVEVSASASSLNSNDVFLLWTQAEH-YLWYGKGSSGDERAMAKELAELL 603

  Fly   610 --GENSLVLEGKESKEFWQSV---AMYFN------QTLVINGNGNSCSSSTSSSSGAGSMCNGSS 663
              |:...|.||:|..|||..:   |.|.|      :||.|......||:.|..            
  Rat   604 CDGDADTVAEGQEPPEFWDLLGGKAPYANDKRLQQETLDIQVRLFECSNKTGR------------ 656

  Fly   664 NGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRYEEILGFDQQDLSSDCTYILDTGSL 728
                                         |||         .|:..|.|.|||.....:|||...
  Rat   657 -----------------------------FLV---------TEVTDFTQDDLSPGDVMLLDTWDQ 683

  Fly   729 TYVWLGSQAPNQERYTAI--AQSYVQNAPFGRRSATALAVVRQFQEPNVFKGFFESWQNDYGKNF 791
            .::|:|::|...|:..|:  ||.|:...|.||...|.:.:::|..||..|.|:|.:|........
  Rat   684 VFLWIGAEANATEKEGALSTAQEYLVTHPSGRDPDTPILIIKQGFEPPTFTGWFLAWDPHIWSEG 748

  Fly   792 HSYEKMRKDLGN-----KVTSNCCFASEGSALILNNRQKDFDGHKKYPLTVLIQEMDM-LPPDIN 850
            .|||:::.:||:     ::|::    .:.:.|.||:.:   .|.|.||:.||::..|. ||.|::
  Rat   749 KSYEQLKNELGDATAIVRITTD----MKNATLSLNSSE---SGPKYYPVEVLLKSQDQELPEDVD 806

  Fly   851 PLKREVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF 892
            |.|:|.:|:..||||||.::..:|..||.||:::|||:..||
  Rat   807 PTKKENYLSERDFVSVFGITRGQFVSLPGWKQLQLKKEAGLF 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:301701 39/122 (32%)
gelsolin_like 164..254 CDD:200436 23/130 (18%)
gelsolin_S3_like 276..375 CDD:200448 29/99 (29%)
GEL 424..526 CDD:214590 23/107 (21%)
ADF_gelsolin 551..625 CDD:301701 29/78 (37%)
gelsolin_like 689..780 CDD:200436 29/92 (32%)
VHP 857..892 CDD:128458 15/34 (44%)
AvilXP_038935869.1 gelsolin_S1_like 7..118 CDD:200446 40/132 (30%)
gelsolin_S2_like 133..252 CDD:200445 21/118 (18%)
gelsolin_S3_like 276..374 CDD:200448 29/98 (30%)
gelsolin_S4_like 418..518 CDD:200449 26/114 (23%)
gelsolin_S5_like 539..629 CDD:200444 31/90 (34%)
gelsolin_S6_like 646..741 CDD:200447 33/144 (23%)
VHP 813..847 CDD:396679 15/33 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100298
Panther 1 1.100 - - O PTHR11977
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.