DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and gsn

DIOPT Version :10

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_031746326.1 Gene:gsn / 549610 XenbaseID:XB-GENE-489535 Length:750 Species:Xenopus tropicalis


Alignment Length:805 Identity:211/805 - (26%)
Similarity:355/805 - (44%) Gaps:135/805 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 FRKVAKHAITFAIWKIDEDRLEAVQRSHYGTFYDSCAYIIYAA--SLSGHYANHETITREQKPNV 88
            |.|..| |....:|::::..|.||.::.||:|:...||::.:.  :.||                
 Frog    25 FEKAGK-APGLQVWRVEKFDLVAVPQNQYGSFFTGDAYLVLSTIKTRSG---------------- 72

  Fly    89 SLERYIHYWLGKNVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYEFRF-S 152
            :|:..:|||||...::....:......::|.:||......||.|..||:.||.|||.|.:::. .
 Frog    73 NLQYDLHYWLGDECTQDESGSAAIFTVQMDDHLGGQPIQNREVQGYESSTFLGYFKPGIKYKAGG 137

  Fly   153 VRSGALISAPQR---PRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYVWIGRSSSGI 214
            |.||.....|..   .||.|:..|:.:|:.|| .::|..||.....:|...|..|.|.|..|:..
 Frog   138 VASGFTHVVPNEVDIKRLLQVKGRRVVRATEV-PVNWDSFNQGDCFILDLGNEIYQWFGSKSNQF 201

  Fly   215 ERRSALDWVQ-----KHCSGSPITIVDDGYEQAMSQEHKELWNTMLPLKKRMVCQASQLVSEYAD 274
            |:..|....:     :....|.:.:|::|.|:....|              ::.|...|....||
 Frog   202 EKLRATAVAKGIRDTERNGRSKLYVVEEGMEREKMIE--------------VLGQKPDLPEGPAD 252

  Fly   275 ------YNSNKFRIYKCNQ-RGRLHLDQLDVGMPAKDDLSDAHGVYLLDNYGQ-SIWLWVGGQAP 331
                  .|....::||.:. :|.:.:..:....|......::...::||:... .|::|.|..|.
 Frog   253 DIKADASNRKLAKLYKVSDGKGAMTVSLVADQNPFTQAALNSDDCFVLDHGSDGKIFVWKGRNAN 317

  Fly   332 QADALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWLNVWQENTRG-------HKP 389
            ..:..:|:.....|:.|..||..|.|..:.|..|...||:.|.||.:  :|.|.|       |..
 Frog   318 MEEKKAALKTATEFISKMGYPKQTQVQVLPENGETPLFKQFFKNWKD--KEATEGMGVAYVPHHI 380

  Fly   390 VSTKFGKLDAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVV--FTTNASFVVK 452
            ...:....|...|.|.|.|||...:||||.|::.|:|:  :..::||:||::.  |....|:::.
 Frog   381 AKIENVPFDVSGLHESPAMAAQHGMVDDGSGQKQIWRI--EDCKKVPVSKSLYGQFYGGDSYIIL 443

  Fly   453 YSVQCATVVPADLASVGIK--TIIYQWNGSEASVESISRADKFAKASFD----GLKEPG--MFVQ 509
            |:.:           .|.|  .|||.|.|.|:|.:.:: |.....|..|    |....|  ..|:
 Frog   444 YNYK-----------HGGKQGQIIYTWQGDESSKDEVT-ASAILSAQLDEELGGTPVQGARSQVR 496

  Fly   510 LYEFDEPPHFLQIFEGK-LIIRRGQRTEMPYNGNSNALLDTFLLKVYGDASYNAKAVE-ETHLSS 572
            :.:..||.|.:.:|.|| :|:.:|..:.   .|......|..|.:|...:|..::||| ::..|:
 Frog   497 VVQGKEPAHLMSLFGGKPMIVNKGGTSR---EGGQTKDADVRLFQVRASSSGFSRAVEVDSTASN 558

  Fly   573 ISSKDCYVIKT-NHVWVWCGQSSTGDAREMAKAVGALMGEN-SLVLEGKESKEFWQSVAMYFNQT 635
            ::|.|.:|:|| :..:.|.||.||...::.|:.:.|::|.: |.:|||:|:.:||.::       
 Frog   559 LNSNDAFVLKTPSAAYQWVGQGSTDAEKKGAQELLAVLGVSASEILEGQETDDFWAAL------- 616

  Fly   636 LVINGNGNSCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQS 700
                  |......||:                   .|.:.  |||      .|| :||....:..
 Frog   617 ------GGKADYRTSA-------------------RLKDK--LNT------HPP-RLFACSNKTG 647

  Fly   701 SLRYEEILG-FDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAIAQS--YVQNAPFGRRSAT 762
            ....||:.| ..|.||::|...:|||....:||:|.:|...|:..|||.:  |:::.|..|...|
 Frog   648 RFIIEEVPGEISQDDLATDDVMLLDTWDQVFVWVGKEAQEDEKKEAIASAYKYIESDPANRDKRT 712

  Fly   763 ALAVVRQFQEPNVFKGFFESWQNDY 787
            .:|:::|..||..|.|:|..|:.||
 Frog   713 PVAIIKQGFEPPTFTGWFLGWETDY 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:472830 34/122 (28%)
gelsolin_like 164..254 CDD:200436 23/97 (24%)
gelsolin_S3_like 276..375 CDD:200448 23/100 (23%)
GEL 424..526 CDD:214590 28/111 (25%)
ADF_gelsolin 551..625 CDD:472830 25/76 (33%)
gelsolin_like 689..780 CDD:200436 31/93 (33%)
VHP 857..892 CDD:128458
gsnXP_031746326.1 gelsolin_S1_like 25..137 CDD:200446 35/128 (27%)
gelsolin_S2_like 153..241 CDD:200445 23/102 (23%)
gelsolin_S3_like 261..361 CDD:200448 22/99 (22%)
gelsolin_S4_like 405..510 CDD:200449 32/118 (27%)
gelsolin_S5_like 534..621 CDD:200444 28/99 (28%)
gelsolin_S6_like 636..734 CDD:200447 33/98 (34%)
Blue background indicates that the domain is not in the aligned region.

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