DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and flii

DIOPT Version :10

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001015848.1 Gene:flii / 548565 XenbaseID:XB-GENE-478681 Length:1270 Species:Xenopus tropicalis


Alignment Length:872 Identity:178/872 - (20%)
Similarity:319/872 - (36%) Gaps:239/872 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IWKIDEDRLEAVQRSHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGKNV 102
            :|:|:......|..:.:|.||::..||:....|..              |.:|...|:||:|:..
 Frog   504 VWQIENFIPTQVDETFHGRFYEADCYIVLKTYLDS--------------NGALHWEIYYWIGQEA 554

  Fly   103 S-EQNRSNVVHKIQELDSYLGNISSIYRETQNLESARF-------LSYFKKGYEFRF-SVRSGAL 158
            : ::...:.:|.: .|.:|||......||....||..|       :||.:.|....| :|.....
 Frog   555 TLDKKACSAIHAV-NLRNYLGAEGRTIREEMGDESEEFSQVFYNDISYIEGGTASGFYTVEDTQY 618

  Fly   159 ISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYVWIGRS---SSGIERRSAL 220
            |:     ||:::|.:|.:| :|...:..|..:..:|.:|......|||.|..   |:..:.|...
 Frog   619 IT-----RLYRIYGKKNIR-LEPMPLKSSSLDPRFVFLLDHGMDIYVWRGSQATLSNTTKARLFA 677

  Fly   221 DWVQKHCSGSPITIVDDGYEQAMSQEHKELWNTMLPLKKRMVCQASQLVSEYADYNSNKFRIYKC 285
            :.:.|:.......|:...:|    .|..|.|..:....:.:    ...|.:  |:...:.::||.
 Frog   678 EKINKNERKGKAEIILLTHE----METAEFWELLGGQPEEL----KPCVPD--DFQPPRPKLYKV 732

  Fly   286 N-QRGRLHLDQLDVGMPAK----------------DDLSDAHGVYLLDNYGQSIWLWVGGQAPQA 333
            . ..|.|.|.|::..:..:                ..|.|...||:||.: ..|::|:|.::.:.
 Frog   733 GLGLGYLELPQINYKISVEHKKRPKIELMPEMRLLHTLLDTKSVYILDCH-SDIFIWIGRKSSRL 796

  Fly   334 DALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWLNVWQ-ENTRGHKPVSTKFG-- 395
            ...:|:..|:........|.:.:|:|.|||.|...||..|.||.:|.: :.||..:.|....|  
 Frog   797 VRAAALKLGQELCSMLHRPKHAMVIRNLEGTECQVFKSKFRNWDDVLKVDYTRNAESVVQGGGLT 861

  Fly   396 ---KLDAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVVFTTN--------ASF 449
               |.||    |:.:|.||            :..:|..:...:|||:....|..        ..|
 Frog   862 GKVKKDA----EKDQMKAD------------LTALFLPRQPPMPISEAEQLTEEWNEDLDGMEGF 910

  Fly   450 VVK--------------------YSVQCATVVPAD------------------------------ 464
            |::                    |...|...:|.:                              
 Frog   911 VLEGKKFARLPEEEFGHFNTQDCYVFLCRYWIPIEQDEEEEQKSKKRKIHGDGEEDEDEEDEEDK 975

  Fly   465 LASVGIKTIIYQWNGSEAS-----VESISRADKFAKASFDGLKEPGMFVQLYEFDEPPHFLQIFE 524
            ......:.::|.|.|.|||     ..:.|...|| ::.|.|..|   .|::.:..|...||..|:
 Frog   976 QPEEDFQCVVYFWQGREASNMGWLTFTFSLQKKF-ESLFPGKLE---VVRMTQQQENAKFLSHFK 1036

  Fly   525 GKLIIRRGQRTEMP-------YNGNSN-ALLDTFLLKVYGDASYNAKAVEETHLSSISSKDCYVI 581
            .|.||.:|:|....       |:..:| :.|.|..:::            .|..|.::|:.|:::
 Frog  1037 RKFIIHKGKRKSKDVGLQPSLYHVRTNGSALCTRCIQI------------NTDCSLLNSEFCFIL 1089

  Fly   582 KT--------NHVWVWCGQSSTGDAREMAKAVGALMGENS----LVLEGKESKE-FWQSVAMYFN 633
            |.        ..|:.|.|:::..|..::::.:...|.:::    ::.||:|.:. ||..:     
 Frog  1090 KVPFESIDNQGIVYTWVGRAADPDEAKLSEDIMNHMFDDTYSKQVINEGEEPENFFWVGI----- 1149

  Fly   634 QTLVINGNGNSCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQ 698
                   .|.......:.......:...|:..|          |.:.|                 
 Frog  1150 -------GGQKAYDEDADYMKHARLFRCSNEKG----------YFSVS----------------- 1180

  Fly   699 QSSLRYEEILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAI--AQSYVQNAPFGRRSA 761
                  |:...|.|.||:.|...:||.|...|:|:|:|....|...::  .|.|:|:    .|:.
 Frog  1181 ------EKCSDFCQDDLADDDIMLLDNGKEVYMWVGTQTSQVEIKLSLKACQVYIQH----MRAK 1235

  Fly   762 TA-----LAVVRQFQEPNVFKGFFESW 783
            .|     |.:||:..||:.|...|.:|
 Frog  1236 DAEHPRKLRLVRKGNEPHAFTRCFHAW 1262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:472830 27/116 (23%)
gelsolin_like 164..254 CDD:200436 21/92 (23%)
gelsolin_S3_like 276..375 CDD:200448 27/115 (23%)
GEL 424..526 CDD:214590 27/164 (16%)
ADF_gelsolin 551..625 CDD:472830 13/86 (15%)
gelsolin_like 689..780 CDD:200436 25/97 (26%)
VHP 857..892 CDD:128458
fliiNP_001015848.1 PPP1R42 <10..163 CDD:455733
leucine-rich repeat 10..34 CDD:275380
leucine-rich repeat 35..57 CDD:275380
leucine-rich repeat 58..80 CDD:275380
leucine-rich repeat 81..105 CDD:275380
LRR 105..>374 CDD:443914
leucine-rich repeat 106..128 CDD:275380
leucine-rich repeat 129..152 CDD:275380
leucine-rich repeat 153..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
leucine-rich repeat 200..224 CDD:275380
leucine-rich repeat 225..247 CDD:275380
leucine-rich repeat 248..270 CDD:275380
leucine-rich repeat 271..318 CDD:275380
leucine-rich repeat 319..341 CDD:275380
gelsolin_S1_like 493..605 CDD:200446 27/115 (23%)
gelsolin_like 620..707 CDD:200436 21/96 (22%)
gelsolin_S3_like 724..838 CDD:200448 27/114 (24%)
gelsolin_like 932..1035 CDD:200436 19/106 (18%)
gelsolin_S5_like 1054..1153 CDD:200444 20/122 (16%)
gelsolin_S6_like 1164..1262 CDD:200447 30/134 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.