DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qua and vill

DIOPT Version :9

Sequence 1:NP_001246066.1 Gene:qua / 35058 FlyBaseID:FBgn0003187 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001005657.1 Gene:vill / 448145 XenbaseID:XB-GENE-945607 Length:876 Species:Xenopus tropicalis


Alignment Length:964 Identity:245/964 - (25%)
Similarity:401/964 - (41%) Gaps:212/964 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IWKIDEDRLEAVQRSHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGKNV 102
            ||.:::.:|..:....||:|::...||:              :..:|.|| .|...||||:||:.
 Frog    16 IWSMEKMKLVPIPEKAYGSFFEGDCYIL--------------LYNKQTPN-GLISDIHYWIGKDS 65

  Fly   103 SEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYEFR---------------FS 152
            |:..:.:......::|..||.....:||.|..|||.|.||||.|..::               ::
 Frog    66 SQDEQGSAAFYATQIDGLLGGGPIQHREVQGHESATFKSYFKNGVIYKKGGVSSGFKHVETNMYN 130

  Fly   153 VRSGALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYVWIGRSSSGIERR 217
            :|           ||..:..:|.:.:.||| :.|:.||...|.:|....:...|.|..|:..||.
 Frog   131 IR-----------RLLHVKGKKHVTATEVA-MSWNSFNKGDVFLLDLGKVIIQWNGPESNKSERI 183

  Fly   218 SALDWVQ-----KHCSGSPITIVDDGYEQAMSQEHKELWNTMLPLKKRMVCQASQLVSEYADYNS 277
            .|....|     :....:.|.::|:      .|:..:|...|:.:   :..:..:|.....|..:
 Frog   184 RACSLAQSIRDDERGGRAQIGVIDN------EQDSPDLMQIMVAV---LGARTGELKDSVPDEKA 239

  Fly   278 NKFRIYKCNQRGRLHLDQLDVGM--------PAKDDLSDAHGVYLLDNYGQSIWLWVGGQAPQAD 334
            ::.:  |.|.| ..|:.:.|..:        |...||......::||..|..|::|.|..:...:
 Frog   240 DEQQ--KANVR-LYHVFEKDANLVVQELATKPLTQDLLQHEDCHILDQGGVKIYVWRGKNSSPEE 301

  Fly   335 ALSAMGNGRAFVKKKKYPDNTLVVRVLEGHEPVEFKRLFANWLNVWQENTRGH--------KPVS 391
            ..:|......|::.|.||..|.|..|.:|.|...||:||.||.:|.:....|.        |...
 Frog   302 KSAAFSRAVGFIQAKGYPPTTNVEVVNDGAESAMFKQLFQNWKDVGETQGLGKTFSVGKIAKVEQ 366

  Fly   392 TKFGKLDAHSLCERPKMAADTQLVDDGRGERVIYRVFGDQVQEV-PISKTVVFTTNASFVVKYSV 455
            |||   |.:.|..||::||:.::|||..|...::|:...::.|| |       .|...|   |..
 Frog   367 TKF---DVNQLYARPELAAEQRMVDDASGNVEVWRIEKLELAEVEP-------RTYGQF---YGG 418

  Fly   456 QCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFD-GLKEPGMFVQLYEFDEPPHF 519
            .|..::...:.|.....::|.|.|..||.:.|: |..|.....| ...:..:.:::....||.|.
 Frog   419 DCYLILYTYMKSGRPNYLLYMWLGRHASQDEIT-ACAFQAVQLDKKYHDQPVQIRVTMGKEPRHL 482

  Fly   520 LQIFEGKLIIRRGQRTEMPYNGNSNAL------LDTFLLKVYGDASYNAKAVE-ETHLSSISSKD 577
            ..:|:||:||         |.|.::.|      ....|.:|.|...||.||.| ....||::|.|
 Frog   483 QAMFKGKMII---------YEGGTSRLGVHEPEAPIKLFQVKGTNEYNTKATEVPARASSLNSND 538

  Fly   578 CYVIKTNHV-WVWCGQSSTGDAREMAKAVGALMG--ENSLVLEGKESKEFWQSVAMYFNQTLVIN 639
            .:|:||..: ::|||:..:||.|||||.|..::.  :...:|||:|..|||  ||:         
 Frog   539 VFVLKTESMCYLWCGKGCSGDEREMAKTVANIISKQDKQTILEGQEPAEFW--VAL--------- 592

  Fly   640 GNGNSCSSSTSSSSGAGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRY 704
                                      |..:|..|:..:...:|...||    ||....|......
 Frog   593 --------------------------GGKAPYASDKRFQEQAVQYSPR----LFECSNQTGRFVM 627

  Fly   705 EEILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAI--AQSYVQNAPFGRRSATALAVV 767
            .|::.|.|.||..|...:|||....::|:|..|.:.|:..::  :|.|::..|.||..||.:.:|
 Frog   628 TEVVDFCQSDLDEDDVMLLDTWEEIFLWVGKSANDYEKTESVKASQEYLRAHPAGRDLATPIILV 692

  Fly   768 RQFQEPNVFKGFFESWQNDYGKNFHSYEKMRKDLGN------------------KVTSNCCFAS- 813
            :|..||..|.|:|.:|.:....:..|||.|:|.||:                  |.|||....| 
 Frog   693 KQGHEPPTFTGWFNAWDSHKWSSDLSYEDMKKTLGDVSAISQISVDLQNTNLNKKSTSNAPPTSS 757

  Fly   814 ---------------------------EGSALILNNRQ------------KDFDGHKKYPLTVLI 839
                                       .|.....|..|            .:.:|::.:..:.||
 Frog   758 APPTSSAPESVPIPMYRSHSQENLQYNNGHQATTNGSQVPNQVKQNPEPLPESNGNQWFDRSFLI 822

  Fly   840 QEM-DMLPPDINPLKREVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF 892
            .:: :.||..::|.|:|::|:..||.::..|...:|.::||||:..||||..||
 Frog   823 NKVTEDLPDGVDPTKKEMYLSDADFAAIMGMPKAQFYQMPKWKQQNLKKQHGLF 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
quaNP_001246066.1 ADF_gelsolin 26..147 CDD:301701 33/108 (31%)
gelsolin_like 164..254 CDD:200436 22/94 (23%)
gelsolin_S3_like 276..375 CDD:200448 28/106 (26%)
GEL 424..526 CDD:214590 22/103 (21%)
ADF_gelsolin 551..625 CDD:301701 31/77 (40%)
gelsolin_like 689..780 CDD:200436 29/92 (32%)
VHP 857..892 CDD:128458 13/34 (38%)
villNP_001005657.1 gelsolin_S1_like 5..116 CDD:200446 34/114 (30%)
gelsolin_S2_like 133..224 CDD:200445 23/100 (23%)
gelsolin_S3_like 244..342 CDD:200448 28/98 (29%)
gelsolin_S4_like 386..486 CDD:200449 25/110 (23%)
gelsolin_S5_like 507..597 CDD:200444 36/126 (29%)
gelsolin_S6_like 613..709 CDD:200447 32/99 (32%)
VHP 842..876 CDD:280388 13/33 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1376537at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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